Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J06
         (907 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.     103   3e-24
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.81 
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   1.4  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   1.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   1.4  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   1.4  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    24   1.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   1.4  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   1.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   1.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.3  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   4.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score =  103 bits (246), Expect = 3e-24
 Identities = 53/89 (59%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
 Frame = +2

Query: 542 GGDDLGSTDEIKVFKDEGDGEDXXXXXXXXXXXXXXXIDWTESEEKSGEPYPGKLSV-KS 718
           GGDDLGSTDE+KVFKDEGDGED               ID TESEEKSG  Y    +V ++
Sbjct: 8   GGDDLGSTDEVKVFKDEGDGEDEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSRA 67

Query: 719 DLSPVFGKFEPHP-AAGFNMGYLVAPYPY 802
           D SPVFGK EP P  + FNMGYLV+PY Y
Sbjct: 68  DHSPVFGKVEPVPHTSSFNMGYLVSPYSY 96



 Score = 29.9 bits (64), Expect = 0.029
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +1

Query: 796 SIPNGGAHPLPVAMTGKXGLP----XGGXLSLFCPXGN 897
           S  NG A P+PV+M  K GL      G  L  FC  G+
Sbjct: 95  SYANGAAGPIPVSMASKMGLAPTGHPGAALPFFCHNGD 132



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 695 PGKLSVKSDLSPVFGKFEPHPAAGFNMGYLVAPYPYLMVAPI 820
           PG LS  S L+   G   P P+       +    PY++ +P+
Sbjct: 684 PGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPL 725



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 854 SPIFPVIATGRGWAPPLGMDKEPPGNPC*SQPPDV 750
           SP+ P  A      PP     +PP NP  + P D+
Sbjct: 723 SPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNPHDI 757


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 771 LKPAAGCGSNLPKTGLRSDFTDSLPGYGSPDFSSLSVQS 655
           +K A  CG N+P   ++S   +  P   SP  ++ S  S
Sbjct: 397 MKEAKHCGVNVPVPPMQSQIINPQPQITSPSNTNTSTSS 435


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 83  PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 113


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/31 (32%), Positives = 12/31 (38%)
 Frame = -3

Query: 866 PPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           PP  +P         G   PL +   PPG P
Sbjct: 127 PPLSTPSNSNATKSSGLTSPLSVSTSPPGKP 157


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 683 GEPYPGKLSVKSDLSPVFGKFEPHPAAGFNMGYLVAPYPYLMV 811
           G PY    S+ S L        P PA GF +G+ +   P+  V
Sbjct: 74  GPPYAPHPSLSSGLGGGLSGM-PMPALGFGLGHPLESVPFPQV 115


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 695 PGKLSVKSDLSPVFGKFEPHPAAGFNMGYLVAPYPYLMVAPI 820
           PG LS  S L+   G   P P+       +    PY++ +P+
Sbjct: 576 PGALSGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPL 617



 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 854 SPIFPVIATGRGWAPPLGMDKEPPGNPC*SQPPDV 750
           SP+ P  A      PP     +PP NP  + P D+
Sbjct: 615 SPLTPHEAFDVKLPPPPHPHHQPPRNPVGTNPHDI 649


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/40 (25%), Positives = 14/40 (35%)
 Frame = -3

Query: 893 PXGQNSDRXPPXGSPIFPVIATGRGWAPPLGMDKEPPGNP 774
           P G      P  G P  P      G++ P+      P +P
Sbjct: 110 PSGNVPPLTPSPGPPSHPYTVISNGYSSPMSSGSYDPYSP 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,460
Number of Sequences: 336
Number of extensions: 4387
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)