Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J06
         (907 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.7  
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_26721| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)                    29   6.8  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             29   6.8  
SB_17885| Best HMM Match : V-set (HMM E-Value=0.051)                   29   6.8  
SB_50772| Best HMM Match : PEGSRP (HMM E-Value=8)                      28   9.0  

>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 273 HGALHAPKTPIFEIFHYPFDTTRTLHSRYHTLSS 172
           H  LH P TP      Y    TR +H+R HT S+
Sbjct: 24  HPRLHTPSTPTATHAEYTHAYTRRVHTRLHTPST 57


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 273 HGALHAPKTPIFEIFHYPFDTTRTLHSRYHTLSS 172
           H  LH P TP      Y    TR +H+R HT S+
Sbjct: 24  HPRLHTPSTPTATHAEYTHAYTRRVHTRLHTPST 57


>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 778 THVEASRRMWFKFTKNWTKIRLHR*FAGVWLSGFLLAFGPI 656
           T + AS++    FT+NWTKI L    A +WL   + A  P+
Sbjct: 74  TIIYASKQKSITFTRNWTKIML----AFLWLFSAIFAILPL 110


>SB_26721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 297 FLVSKHCEHGALHAPKTPIFEIFHYPFD---TTRTLHSRYHTLSSLIALAMHVMWYTGHY 127
           + +  H  H  L  P TPI+ I+ YP     +T    + +H   S   + ++++    HY
Sbjct: 135 YTIHSHTHHPQLSTPYTPIYTIYSYPHHPQLSTAIYTNPHHPQLSTPYITIYIIRSYPHY 194


>SB_43869| Best HMM Match : ig (HMM E-Value=2.7e-06)
          Length = 399

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 332 LKC-LMRCSVSFRSWYLNTASMAHSTRLKLQYLKYFTIRLTQHARYILVITHCR-RLLH 162
           LKC  M  S+    W + T+    ST +      Y  I+ ++HA YI+ I H R R+LH
Sbjct: 233 LKCNAMSDSMPRFRWLILTSPQNASTLINETPNHYKVIKQSRHADYIVRIKHDRLRVLH 291


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 495  PEFYYIPSSNQTPTICHPCHFKTPQQLTSYPD 400
            P  YY P ++  P +C P H+  P +L  Y D
Sbjct: 3462 PAGYYCPRNSSQPVLCPPGHYCDP-KLNCYND 3492


>SB_17885| Best HMM Match : V-set (HMM E-Value=0.051)
          Length = 191

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 332 LKC-LMRCSVSFRSWYLNTASMAHSTRLKLQYLKYFTIRLTQHARYILVITHCR-RLLH 162
           LKC  M  S+    W + T+    ST +      Y  I+ ++HA YI+ I H R R+LH
Sbjct: 25  LKCNAMSDSMPRFRWLILTSPQNASTLINETPNHYKVIKQSRHADYIVRIKHDRLRVLH 83


>SB_50772| Best HMM Match : PEGSRP (HMM E-Value=8)
          Length = 111

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = -3

Query: 461 PPLSVIHVTLKRHSN*H---PILIQVSSL 384
           PP S + +T+ RHS+ H   PIL Q SSL
Sbjct: 36  PPRSAVFITIARHSSKHTPPPILGQSSSL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,298,965
Number of Sequences: 59808
Number of extensions: 592425
Number of successful extensions: 4580
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4573
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)