Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J06
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   3.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   8.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   8.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.8  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 87  PFALLRQTDADKQNNDQCTTLRASRVQ*ATTVCDNENVTC 206
           P  + RQ ++D Q       ++  R   A+T C    V C
Sbjct: 260 PVTVNRQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVRC 299


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 154 HRECNKRRQCVITRM*RACC 213
           +R C K +QC I R+ R  C
Sbjct: 52  YRPCTKNQQCSILRINRNRC 71


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 154 HRECNKRRQCVITRM*RACC 213
           +R C K +QC I R+ R  C
Sbjct: 101 YRPCTKNQQCSILRINRNRC 120


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 248 VLGAWSAPCSQCL 286
           V+  WS  CSQC+
Sbjct: 353 VVNLWSGFCSQCI 365


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 160 RDARNVVHWSLF 125
           R  RN+VHW+ F
Sbjct: 220 RKLRNIVHWTPF 231


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 160 RDARNVVHWSLF 125
           R  RN+VHW+ F
Sbjct: 135 RKLRNIVHWTPF 146


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 160 RDARNVVHWSLF 125
           R  RN+VHW+ F
Sbjct: 454 RKLRNIVHWTPF 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,343
Number of Sequences: 438
Number of extensions: 5356
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)