Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J06
         (907 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29970.1 68415.m03645 heat shock protein-related contains sim...    31   1.1  
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [...    30   2.4  
At4g37560.1 68417.m05316 formamidase, putative / formamide amido...    29   5.6  
At4g39590.1 68417.m05597 kelch repeat-containing F-box family pr...    25   8.4  
At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger) fa...    28   9.8  
At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger) fa...    28   9.8  
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468...    28   9.8  

>At2g29970.1 68415.m03645 heat shock protein-related contains
           similarity to 101 kDa heat shock protein; HSP101
           [Triticum aestivum] gi|11561808|gb|AAC83689
          Length = 1002

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = -2

Query: 510 GIFNSPEFYYIPSS---NQTPTICHPCHFKTPQQLTSY 406
           G F+S   + IPSS   NQT   CH C+ K  Q++T++
Sbjct: 397 GFFSSTSDFRIPSSSSMNQTLPRCHLCNEKYEQEVTAF 434


>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
           [Lycopersicon esculentum] GI:5420276; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 461

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 549 SPPELAAELE*ACGIFNSPEFYYIPSSNQTPTIC 448
           SPP     +E +CG  +SP+F  I S ++ P +C
Sbjct: 161 SPPRPFGTVERSCGGASSPKFVDIDSDDKDPLLC 194


>At4g37560.1 68417.m05316 formamidase, putative / formamide
           amidohydrolase, putative similar to SP|Q50228
           Formamidase (EC 3.5.1.49) (Formamide amidohydrolase)
           {Methylophilus methylotrophus}; contains Pfam profile
           PF03069: Acetamidase/Formamidase family
          Length = 452

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 159 AMHVMWYTGHYFVYRRQFDGEARTGRGRPGVAGTT-SKKVLR 37
           A   +WY    + Y  Q  G    G   PG+ GT  SK++LR
Sbjct: 134 ATKAIWYFEGIYAYSPQIPGVRFPGLTHPGIIGTAPSKELLR 175


>At4g39590.1 68417.m05597 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 402

 Score = 25.0 bits (52), Expect(2) = 8.4
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 728 D*DPTSQIV---CRGMALRISPRFRSNRLDSTSPLI 630
           D +P+S++    CR    R  PR R NR  ST+ ++
Sbjct: 161 DREPSSKVSILDCRSHTWRDGPRMRLNRRSSTTSVV 196



 Score = 21.4 bits (43), Expect(2) = 8.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 902 PXFPXGQNSDRXPPXGSPIFPVIATGRGWAPPLGMDKEP 786
           P +P   +S+     GS I+ +  T    + PLG D+EP
Sbjct: 127 PQYPLTLSSNLVA-VGSNIYRIGGTVGDDSCPLGFDREP 164


>At1g57820.2 68414.m06561 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 642

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -3

Query: 269 AHSTRLKLQYLKYFTIRLTQHARYILVITHCRRLLHSRCT*CGTLVIILFIGVSLTEKRE 90
           AHS  ++ + LK F  ++ Q    + V T C    H+ C  C   +   F G +L   RE
Sbjct: 500 AHSNTMRARLLKEFKCQICQQVLTLPVTTPC---AHNFCKAC---LEAKFAGKTLV--RE 551

Query: 89  RAAAGRESR 63
           R+  GR  R
Sbjct: 552 RSTGGRTLR 560


>At1g57820.1 68414.m06560 zinc finger (C3HC4-type RING finger)
           family protein low similarity to nuclear protein np95
           [Mus musculus] GI:4220590; contains Pfam profiles
           PF02182: YDG/SRA domain, PF00097: Zinc finger, C3HC4
           type (RING finger), PF00628: PHD-finger
          Length = 645

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = -3

Query: 269 AHSTRLKLQYLKYFTIRLTQHARYILVITHCRRLLHSRCT*CGTLVIILFIGVSLTEKRE 90
           AHS  ++ + LK F  ++ Q    + V T C    H+ C  C   +   F G +L   RE
Sbjct: 503 AHSNTMRARLLKEFKCQICQQVLTLPVTTPC---AHNFCKAC---LEAKFAGKTLV--RE 554

Query: 89  RAAAGRESR 63
           R+  GR  R
Sbjct: 555 RSTGGRTLR 563


>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
           Excision repair protein ERCC-6 (Cockayne syndrome
           protein CSB) {Homo sapiens}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF02810: SEC-C motif
          Length = 862

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 20/45 (44%), Positives = 22/45 (48%)
 Frame = -2

Query: 771 LKPAAGCGSNLPKTGLRSDFTDSLPGYGSPDFSSLSVQSIRLDFS 637
           LKP   CGS    + LR   T  L     P  SSLS Q +RLD S
Sbjct: 11  LKP---CGSFPSSSSLRVSSTQELEPSRKPPKSSLSQQLLRLDDS 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,089,016
Number of Sequences: 28952
Number of extensions: 395078
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)