Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J05
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   152   7e-38
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   3.6  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   4.8  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    26   6.3  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  152 bits (368), Expect = 7e-38
 Identities = 77/146 (52%), Positives = 106/146 (72%), Gaps = 3/146 (2%)
 Frame = +2

Query: 89  IKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPMP 262
           +K S ++    +  ++Q L +LE++S D+  +LR L IT A+E+E+   KK+I+++VP P
Sbjct: 8   VKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQP 67

Query: 263 KLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 442
            LKAF K Q RL RELEKKF+ +HV+F+  R+ILPKP  K+RV   QKRPRSRTLT+V++
Sbjct: 68  LLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVHN 125

Query: 443 AILEDLVFPAEIVGKRIRXQV-GRLT 517
           AILED+VFP EI+GKR R    GR T
Sbjct: 126 AILEDIVFPTEIIGKRTRQATDGRKT 151



 Score = 31.9 bits (69), Expect = 0.13
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +1

Query: 586 SVYKKLTGREVTFEFP 633
           SVY KLTG+ VTFEFP
Sbjct: 173 SVYHKLTGKNVTFEFP 188


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 375 LGLGRILRSPTKTTCLPLNFFSSSRTS 295
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 245 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 337
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 403 KEATLKDIDLCVRCYPRGLGLPC 471
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,046
Number of Sequences: 5004
Number of extensions: 51980
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)