Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_J05
(897 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 151 6e-37
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 1.3
SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14) 29 6.7
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 29 6.7
SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11) 29 6.7
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 8.9
SB_24560| Best HMM Match : Ank (HMM E-Value=0) 28 8.9
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 8.9
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 151 bits (367), Expect = 6e-37
Identities = 73/110 (66%), Positives = 91/110 (82%)
Frame = +2
Query: 89 IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 268
+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP+P++
Sbjct: 12 VKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVPVPQI 71
Query: 269 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 418
+AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 72 RAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 36.3 bits (80), Expect = 0.034
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +3
Query: 531 HLDKNQQTTIEHKVDTFQXCIQEANG 608
HLDK QQTTI+HK++TF ++ G
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTG 146
Score = 34.7 bits (76), Expect = 0.10
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +1
Query: 541 KTNRLLLNIKWTPSXSVYKKLTGREVTFEFP 633
KT + ++ K +VYKKLTG++V FEFP
Sbjct: 124 KTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +2
Query: 161 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 325
+ + K L+E+ I ++K+ E + + KS PKLKA Q + + KK
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320
Query: 326 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 418
K V+ LP+ +H+ AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354
>SB_22619| Best HMM Match : TSP_1 (HMM E-Value=8.5e-14)
Length = 506
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +1
Query: 382 NSCC*QTKEATLKDIDLCV---RCYPRGL---GLPC*DRRQAHQGSSWTAHSSLRC 531
N+C TK T D+ C+ RCY G PC D Q+ Q WT +++LRC
Sbjct: 389 NAC--YTKVGTQCDLRQCLISGRCYSYGTVNPSNPCQDC-QSRQKMGWTNNNALRC 441
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.7 bits (61), Expect = 6.7
Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Frame = +2
Query: 155 ETNSDLKAQLRE----LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKF 322
E N+ LK +L E L +T+ +E E+ N K + +YV M KL++ Q ELEK+
Sbjct: 1699 EDNAILKRKLDEKETALKVTQDREREM-NDKLMALYVNMSKLESTQGTLEEKNAELEKE- 1756
Query: 323 SGKHVVFVGDRKILP-KPSHKTRVANKQ 403
++ ++I P K S T VA +
Sbjct: 1757 -----LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_17854| Best HMM Match : RnaseH (HMM E-Value=0.11)
Length = 237
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 400 FVSNTSFVAGLRQDLTVSNKDYMFTTE 320
F+ N SFV+ + DLT S+ D+ + TE
Sbjct: 40 FIPNLSFVSAVLWDLTKSSSDFQWHTE 66
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 113 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 280
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_24560| Best HMM Match : Ank (HMM E-Value=0)
Length = 248
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 440 DAILEDLVFPAEIVGKRIRXQVGRLTAH*GALRQKPTD 553
DA+ EDL P + K+ +VGRL GA K D
Sbjct: 45 DAMKEDLSTPLHVACKKGSMEVGRLLVEKGAALDKKND 82
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 8.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 165 PTSKPNFGSFTLQKLKKLNYTIRS 236
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,286,706
Number of Sequences: 59808
Number of extensions: 387455
Number of successful extensions: 939
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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