Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J05
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   166   2e-41
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    29   6.0  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    29   6.0  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  166 bits (404), Expect = 2e-41
 Identities = 78/140 (55%), Positives = 107/140 (76%), Gaps = 1/140 (0%)
 Frame = +2

Query: 89  IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 268
           +K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P+L
Sbjct: 9   LKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQL 68

Query: 269 KAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRV-ANKQKRPRSRTLTSVYDA 445
           KAF KI   LVRELEKKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA
Sbjct: 69  KAFHKIHPALVRELEKKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDA 128

Query: 446 ILEDLVFPAEIVGKRIRXQV 505
            L++LV+PAE+VG+RIR ++
Sbjct: 129 WLDELVYPAEVVGRRIRVKL 148



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = +3

Query: 501 KLDGSQLIKVHLDKNQQTTIEHKVDTFQXCIQEANG 608
           KLDG ++ KVHLDK+ QT + HK+  F    ++  G
Sbjct: 147 KLDGKKVYKVHLDKSHQTNVGHKIGVFASVYRKLTG 182



 Score = 37.5 bits (83), Expect = 0.013
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +1

Query: 586 SVYKKLTGREVTFEFPETLF 645
           SVY+KLTG++VTFEFP+ +F
Sbjct: 175 SVYRKLTGKDVTFEFPDPIF 194


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 147 SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCR 257
           S+SK T      F SF  Q ++K  YT  S SSS  R
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSR 412


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 547 WFLSKCTLMSCEPSNLXPDALAYDLSREDQVLEDS 443
           WF   C L  C    + P+ + YD  + + +L+ S
Sbjct: 72  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 106


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 547 WFLSKCTLMSCEPSNLXPDALAYDLSREDQVLEDS 443
           WF   C L  C    + P+ + YD  + + +L+ S
Sbjct: 84  WFCKTCRLTRCLSIGMSPENIQYDRDKFESILKSS 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,837,483
Number of Sequences: 27780
Number of extensions: 297667
Number of successful extensions: 769
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)