Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_J05
(897 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 140 1e-33
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 140 1e-33
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 136 2e-32
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 129 2e-30
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 129 2e-30
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 1.8
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 1.8
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 29 4.2
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 9.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 140 bits (339), Expect = 1e-33
Identities = 71/140 (50%), Positives = 103/140 (73%), Gaps = 2/140 (1%)
Frame = +2
Query: 92 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 265
K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 10 KDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRL 69
Query: 266 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 445
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEA 125
Query: 446 ILEDLVFPAEIVGKRIRXQV 505
+LED+ +PAEIVGKR R ++
Sbjct: 126 MLEDVAYPAEIVGKRTRYRL 145
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 589 VYKKLTGREVTFEFP 633
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 501 KLDGSQLIKVHLDKNQQTTIEHKVDTFQXCIQEANG 608
+LDG++++KV LD + E+K++T ++ G
Sbjct: 144 RLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTG 179
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 140 bits (339), Expect = 1e-33
Identities = 71/140 (50%), Positives = 103/140 (73%), Gaps = 2/140 (1%)
Frame = +2
Query: 92 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 265
K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 10 KDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRL 69
Query: 266 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 445
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVHEA 125
Query: 446 ILEDLVFPAEIVGKRIRXQV 505
+LED+ +PAEIVGKR R ++
Sbjct: 126 MLEDVAYPAEIVGKRTRYRL 145
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 589 VYKKLTGREVTFEFP 633
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +3
Query: 501 KLDGSQLIKVHLDKNQQTTIEHKVDTFQXCIQEANG 608
+LDG++++KV LD + E+K++T ++ G
Sbjct: 144 RLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTG 179
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 136 bits (328), Expect = 2e-32
Identities = 72/140 (51%), Positives = 100/140 (71%), Gaps = 2/140 (1%)
Frame = +2
Query: 92 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPK 265
K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 10 KDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRL 69
Query: 266 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 445
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV++A
Sbjct: 70 RKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVHEA 125
Query: 446 ILEDLVFPAEIVGKRIRXQV 505
+LED+ FPAEIVGKR R ++
Sbjct: 126 MLEDVAFPAEIVGKRTRYRL 145
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 501 KLDGSQLIKVHLDKNQQTTIEHKVDTFQXCIQEANG 608
+LDGS+++KV LD ++ E+K++T ++ G
Sbjct: 144 RLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTG 179
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 589 VYKKLTGREVTFEFP 633
VY+KLTG++V FE+P
Sbjct: 173 VYRKLTGKDVVFEYP 187
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 129 bits (312), Expect = 2e-30
Identities = 66/140 (47%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
Frame = +2
Query: 92 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPK 265
K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 10 KEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRL 69
Query: 266 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 445
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++A
Sbjct: 70 RKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEA 125
Query: 446 ILEDLVFPAEIVGKRIRXQV 505
IL+D+V PAEIVGKR R ++
Sbjct: 126 ILDDVVLPAEIVGKRTRYRL 145
Score = 32.7 bits (71), Expect = 0.34
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 586 SVYKKLTGREVTFEFPET 639
+VYKKLTG++V FEFP T
Sbjct: 172 AVYKKLTGKDVVFEFPIT 189
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 501 KLDGSQLIKVHLDKNQQTTIEHKVDTFQXCIQEANG 608
+LDG++++KV LD ++ E+KV+ F ++ G
Sbjct: 144 RLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 129 bits (312), Expect = 2e-30
Identities = 66/140 (47%), Positives = 99/140 (70%), Gaps = 2/140 (1%)
Frame = +2
Query: 92 KASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPK 265
K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 10 KEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRL 69
Query: 266 LKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDA 445
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV++A
Sbjct: 70 RKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVHEA 125
Query: 446 ILEDLVFPAEIVGKRIRXQV 505
IL+D+V PAEIVGKR R ++
Sbjct: 126 ILDDVVLPAEIVGKRTRYRL 145
Score = 32.7 bits (71), Expect = 0.34
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +1
Query: 586 SVYKKLTGREVTFEFPET 639
+VYKKLTG++V FEFP T
Sbjct: 172 AVYKKLTGKDVVFEFPIT 189
Score = 32.3 bits (70), Expect = 0.45
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 501 KLDGSQLIKVHLDKNQQTTIEHKVDTFQXCIQEANG 608
+LDG++++KV LD ++ E+KV+ F ++ G
Sbjct: 144 RLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 397 QTKEATLKDIDLCVRCYPRGLG 462
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 397 QTKEATLKDIDLCVRCYPRGLG 462
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 59 RKVVKXXTXXIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHN 229
+ +++ T +KA SF+ I + +EL T+ DL+ E EI EL
Sbjct: 547 KALIRELTSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSK 606
Query: 230 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSG 328
K + V + KA ++ L K +G
Sbjct: 607 KVVDLTSVAQGEKKAVHDAKVELAAAYSKLLAG 639
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 218 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 367
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,016,677
Number of Sequences: 28952
Number of extensions: 281927
Number of successful extensions: 746
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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