Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J04
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.006
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 14/43 (32%), Positives = 16/43 (37%)
 Frame = +2

Query: 776 NPXLPPXKXPPXPPPGXPPXAPSXQPPXXXPPSXXGGPSPXHH 904
           +P  P    PP P  G PP  P   PP   P      P+   H
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISPASGIH 72



 Score = 31.1 bits (67), Expect = 0.015
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +2

Query: 773 PNPXLPPXKXPPXPPPGXPPXAPSXQPPXXXPPSXXGGPSP 895
           P P   P + P  P  G PP  PS  PP   PP      +P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPN-PSQGPPPGGPPGAPPSQNP 60



 Score = 27.5 bits (58), Expect = 0.18
 Identities = 15/43 (34%), Positives = 17/43 (39%)
 Frame = +2

Query: 791 PXKXPPXPPPGXPPXAPSXQPPXXXPPSXXGGPSPXHHPGXXP 919
           P    P P P  P  +P   P    PP+   GP P   PG  P
Sbjct: 16  PSSGAPGPQPS-PHQSPQA-PQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 827 PPXAPSXQPPXXXPPSXXGGPSPXHHPGXXP 919
           PP A +  PP     +  G P   + PG  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMP 440


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 788 PPXKXPPXPPP 820
           PP   PP PPP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,672
Number of Sequences: 438
Number of extensions: 5054
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)