Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J03
         (900 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.9  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   5.7  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.7  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   5.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.9  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 568 PQFFLIIRRMSSVTVSHINIYWLGVKXEEALEQAVSLEG 452
           P  FL+ R   ++  S + I WL V  +  +   VSL G
Sbjct: 529 PAPFLLKRENYTLPASAVGIAWLYVDNDCCIRYDVSLSG 567


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 473 FQRFLRFNPKPIYIDMGNRYRRHASDDQEELRQYNEHFLIPRDIF 607
           F R L  N  P+ +     + +   + +EEL ++ E  L   D++
Sbjct: 401 FNRHLNSNRAPLGLHFHASWLKSKKEFKEELIKFIEEMLQRNDVY 445


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 473 FQRFLRFNPKPIYIDMGNRYRRHASDDQEELRQYNEHFLIPRDIF 607
           F R L  N  P+ +     + +   + +EEL ++ E  L   D++
Sbjct: 408 FNRHLNSNRAPLGLHFHASWLKSKKEFKEELIKFIEEMLQRNDVY 452


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = +1

Query: 274 PILPSKIDDVQLDPNRRYVRSVTNPENNEASIEH 375
           PI     DD+  +    + +S+TN   +  +++H
Sbjct: 284 PIWTRNADDISQEEYGEFYKSLTNDWEDHLAVKH 317


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +3

Query: 453 PSRETACSNASSXLTPSQYILIWETVTDDMRRMIKKNCG 569
           P R+  C   +   T S  +LI E    D R      CG
Sbjct: 76  PKRQFICKYCNRQFTKSYNLLIHERTHTDERPYSCDICG 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,151
Number of Sequences: 336
Number of extensions: 4278
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)