Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_J03
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791... 34 0.13
05_06_0074 + 25375431-25375631,25375785-25376195,25376474-253765... 33 0.41
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 31 0.94
05_04_0030 - 17338646-17338669,17338817-17339386 30 2.9
01_05_0560 - 23288078-23288370,23288448-23288733 30 2.9
04_04_0766 - 27923120-27923554,27923843-27924580,27924815-279248... 29 5.0
03_03_0132 + 14711645-14711839,14712641-14712970,14713689-147137... 29 5.0
08_02_0783 - 21166491-21166892,21167139-21167251,21168127-211682... 29 6.7
04_03_0092 + 11079185-11079589,11081319-11081409,11081507-110816... 29 6.7
05_02_0047 + 6006808-6007129,6009229-6009890,6009980-6010129,601... 28 8.8
>02_05_1010 +
33477878-33478446,33478709-33478834,33478905-33479190,
33479293-33479484,33479641-33479870,33480379-33480718,
33481673-33481789,33481940-33482014
Length = 644
Score = 34.3 bits (75), Expect = 0.13
Identities = 23/108 (21%), Positives = 50/108 (46%)
Frame = +2
Query: 251 VRQVLQTIRFFLRKSTTCSSIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVT 430
+ + + I F + ST CS ++ + ++K + RP+ + + T+ + +T
Sbjct: 399 IHEEIYNIYSFHQSSTLCS-VEFALEYCYFLVEKKSTRPIYLDDFSKLSYCTTLAEMAIT 457
Query: 431 QGTCGFCTLEGNCLFQRFLRFNPKPIYIDMGNRYRRHASDDQEELRQY 574
+ G+C + + F R P P D+ + R+ +DD+ + RQ+
Sbjct: 458 EIRGGYCYQKCHPRF-RHRDMLPPPDSADLSSSRSRYTNDDEHDARQH 504
>05_06_0074 +
25375431-25375631,25375785-25376195,25376474-25376589,
25377016-25377064,25377722-25378247,25378339-25379060
Length = 674
Score = 32.7 bits (71), Expect = 0.41
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Frame = -3
Query: 601 IPRNQKVLIILPQFFLIIRRMSSVTVSHINIYWLG--VKXEEALEQ---AVSLEGTKTAG 437
IP+ +K++ IL FL S+T S +N+Y++ + ++ L+ ++L G+ G
Sbjct: 231 IPQ-KKLIAILYVSFLRSTSPQSLTCSMVNLYYIDHELNIDDFLQDDDYKINLPGSNPDG 289
Query: 436 PLCYGGSRSAGQVQYQLYDVNVQWTPRYFLD 344
P G GQ+++Q Y++ + P F+D
Sbjct: 290 PNTMQG---IGQLEHQQYNLPLDLPPNSFVD 317
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 31.5 bits (68), Expect = 0.94
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 247 PRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHT 387
P P T H I S +DD+ R VR +P+N ++ + S +T
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNT 2110
>05_04_0030 - 17338646-17338669,17338817-17339386
Length = 197
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -3
Query: 592 NQKVLIILPQFFLIIRRMSSVTVSHINIY-WLGVKXEEALEQAVSLEGTKTAGPL 431
++ ++ +LPQ+F II ++ V V I+ W K + AL A++L G GP+
Sbjct: 55 DRSLMWLLPQWFCIIAAVAMVAVFAAEIFPWCESKGDVAL-CAIALAGALLMGPI 108
>01_05_0560 - 23288078-23288370,23288448-23288733
Length = 192
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 244 VPRAPSTADHPILPSKIDDVQLDPNRRYVRS 336
+PR P A H +L S DDV DP+ RYV S
Sbjct: 120 LPR-PLRAGHYVLSSPPDDVDHDPDHRYVFS 149
>04_04_0766 -
27923120-27923554,27923843-27924580,27924815-27924874,
27925281-27925328
Length = 426
Score = 29.1 bits (62), Expect = 5.0
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 156 LQATANTAPDNTYSATSWPGTAMAVSR*QCSSCAKYCRPSDSSFENRRRAARS 314
L T++ APD +A + + V+ SS CRPS SSF +R A S
Sbjct: 154 LVPTSSPAPDQAPAAEATDVDDVVVAALDSSSIDGSCRPSPSSFVAWKRTADS 206
>03_03_0132 +
14711645-14711839,14712641-14712970,14713689-14713751,
14713833-14713906,14714004-14714099,14714705-14714759,
14714867-14714971,14715054-14715135,14715450-14715562,
14715717-14716118
Length = 504
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 723 HCIXMQNY*KYHLNLSNYDSMNIGVHSE 640
HCI Y K HL+ S + +N+ HS+
Sbjct: 348 HCIYDGGYCKLHLSYSRHTDLNVKAHSD 375
>08_02_0783 -
21166491-21166892,21167139-21167251,21168127-21168208,
21168298-21168416,21168471-21168528,21168954-21169016,
21169641-21169850,21171549-21171731
Length = 409
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 723 HCIXMQNY*KYHLNLSNYDSMNIGVHSE 640
HCI Y K HL+ S + +N+ H E
Sbjct: 253 HCIYDGGYCKLHLSYSRHTDLNVKAHDE 280
>04_03_0092 +
11079185-11079589,11081319-11081409,11081507-11081612,
11081694-11081976,11082062-11082210,11083582-11083735,
11083837-11084793
Length = 714
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +2
Query: 449 CTLEGNCLFQRFLRFNPK-PIYID 517
C G+ LF FLRFNPK P + D
Sbjct: 84 CAPLGHVLFDEFLRFNPKNPYWFD 107
>05_02_0047 +
6006808-6007129,6009229-6009890,6009980-6010129,
6010765-6010857,6011370-6011675
Length = 510
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +3
Query: 99 FSSGAVLCSGFVPAVHPADLQATANTAPDNTYSATSWPG 215
F++G +L +GFV +H A+ ++ P + + + +PG
Sbjct: 181 FAAGVILATGFVHMLHDAEHALSSPCLPAHPWRSFPFPG 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,883,058
Number of Sequences: 37544
Number of extensions: 463090
Number of successful extensions: 1220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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