Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J03
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.059
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    33   0.31 
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)                   33   0.31 
SB_36576| Best HMM Match : FerB (HMM E-Value=9)                        32   0.55 
SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)               31   0.96 
SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)                31   0.96 
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 29   5.1  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 29   6.8  
SB_19358| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_49132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 35.5 bits (78), Expect = 0.059
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
 Frame = -2

Query: 326 YLRFGSSC-TSSIFEG---RIG-WSA-----VLGARGTLSP*YSHSGSWPACRAVRVIGR 177
           ++ FG SC    I  G    +G W +     ++   G +S    H GSW +CR + ++  
Sbjct: 78  HVEFGGSCRVLGIMSGCGNHVGSWESCRVVGIMSGCGIMSSPGDHVGSWGSCRVLGIMSG 137

Query: 176 CVGGGLKVG 150
           C GGGL++G
Sbjct: 138 C-GGGLRIG 145


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +1

Query: 238 DNVPRAPSTADHPI--LPSKIDDV--QLDPNRRYVRSVTNPENNEASIEHS-HHTVDTGL 402
           + + RA   ADH I  +  K+D    QLD N +Y++ + NP+  +  ++      V    
Sbjct: 253 EEIERAKVAADHLISEVKDKLDIAKEQLDDNAKYIKCLENPDEADKYVKQKIQQRVKRTA 312

Query: 403 DQPIESHR 426
           +  +ESHR
Sbjct: 313 ENLVESHR 320


>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
          Length = 1487

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +1

Query: 238 DNVPRAPSTADHPI--LPSKIDDV--QLDPNRRYVRSVTNPENNEASIEHS-HHTVDTGL 402
           + + RA   ADH I  +  K+D    QLD N +Y++ + NP+  +  ++      V    
Sbjct: 229 EEIERAKVAADHLISEVKDKLDIAKEQLDDNAKYIKCLENPDEADKYVKQKIQQRVKRTA 288

Query: 403 DQPIESHR 426
           +  +ESHR
Sbjct: 289 ENLVESHR 296


>SB_36576| Best HMM Match : FerB (HMM E-Value=9)
          Length = 223

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 22/68 (32%), Positives = 33/68 (48%)
 Frame = -1

Query: 309 ELHVVDFRRKNRMVCSTWRTRNIVTLIQP*RFLASLSRCTCYRALCWRWPEGRLDEPLAR 130
           ELH+  FRR+NRM       R+I++      F      CT Y+ +CW++ E R+   L  
Sbjct: 64  ELHM--FRRENRMAGKQLPARDILS------FENKRRNCTVYKCVCWQYSE-RMHSSLIE 114

Query: 129 SLSKEQHQ 106
            +S    Q
Sbjct: 115 LVSSYLRQ 122


>SB_41062| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
          Length = 147

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 240 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQSRK 353
           QC+ C KY R S S   ++R  +  KP  C +C +  K
Sbjct: 6   QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 43



 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 240 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQSRK 353
           QC+ C KY R S S   ++R  +  KP  C +C +  K
Sbjct: 62  QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 99


>SB_6685| Best HMM Match : zf-C2H2 (HMM E-Value=2.4e-31)
          Length = 147

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 240 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQSRK 353
           QC+ C KY R S S   ++R  +  KP  C +C +  K
Sbjct: 6   QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 43



 Score = 31.5 bits (68), Expect = 0.96
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 240 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQSRK 353
           QC+ C KY R S S   ++R  +  KP  C +C +  K
Sbjct: 62  QCNECGKYFRYSRSMKSHQRIHSEEKPYQCVECDKFYK 99


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 240 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQC 338
           QCS+C+K    S S   + R  +  KP +CS C
Sbjct: 762 QCSTCSKSYSTSRSLVRHERSHSSEKPYLCSDC 794


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = +2

Query: 200  DKLARNRYGCIKVTMFLVRQVLQTIRFFLRKSTT------CSSIQTEGMFAVSPIQKI 355
            D ++R+R  C+ V + ++ Q+       L  + T      C+S+   G+ AVS I KI
Sbjct: 890  DPVSRDRRSCLPVHLCILSQLYDAFSVLLDSTETAYLSVGCASVMCLGLCAVSAIMKI 947


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +2

Query: 287 RKSTTCSSIQTEGMFAVSPIQKITRRPLN--IH-IIQLILDLTSRSRATVTQGTCGFCTL 457
           RK++T SS  +    A  P Q +   P +  +H I+ L+L LTS  + T++QG+  + + 
Sbjct: 297 RKASTASSHSSSFRLAKKP-QHVCSNPPSCLLHSIVALLLCLTSDGQLTLSQGSANWSSA 355

Query: 458 EGNC 469
             +C
Sbjct: 356 LQSC 359


>SB_19358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 293 STTCSSIQTEGMFAVSPIQK 352
           STTCS++ T G +A++P +K
Sbjct: 89  STTCSAVTTVGGYAITPFRK 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,799,554
Number of Sequences: 59808
Number of extensions: 541677
Number of successful extensions: 1539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)