Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J03
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical ...    31   1.0  
At5g48385.1 68418.m05980 expressed protein                             29   3.2  
At1g67220.1 68414.m07651 zinc finger protein-related similar to ...    29   3.2  
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam...    29   4.2  
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam...    29   4.2  
At4g28590.1 68417.m04089 expressed protein                             28   7.3  
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i...    28   9.7  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   9.7  

>At1g10520.1 68414.m01184 DNA polymerase lambda (POLL) identical to
           DNA polymerase lambda GI:12053869 from [Arabidopsis
           thaliana]
          Length = 529

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = +1

Query: 220 LWLYQG-DNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTVDT 396
           L LYQ  ++   +   A+  +   KID  ++D  ++ + +++  E+  +  + + ++ D 
Sbjct: 86  LMLYQWLEDSLTSGEKANEDLYVLKIDSEEVDKPKKSLPAISGSEDQSSPQKRTRYSPDA 145

Query: 397 GLDQPIESHRNTR 435
           G  + +ESH NT+
Sbjct: 146 GDFKGVESHSNTQ 158


>At5g48385.1 68418.m05980 expressed protein
          Length = 558

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = -3

Query: 460 LEGTKTAGPLCYGGSRSAGQVQYQLYDVNVQWTPRYFLDW*HCE-HTFGLDRAARRRFSK 284
           +E T++   L    S    Q+Q    ++  Q      L W   E H  GL+R+ +RRF +
Sbjct: 1   MEDTRSVASLMDSTSSKIQQLQKAFAELESQRAVTLNLKWKELEEHFHGLERSLKRRFHE 60

Query: 283 EESDGLQY 260
            E    +Y
Sbjct: 61  LEDQEKEY 68


>At1g67220.1 68414.m07651 zinc finger protein-related similar to
           SP|Q09472 E1A-associated protein p300 {Homo sapiens},
           SP|Q92793 CREB-binding protein {Homo sapiens}; contains
           Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
           PHD-finger, PF02135: TAZ zinc finger
          Length = 1357

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +2

Query: 308 SIQTEGMFAVSPIQKITRRPLNIHIIQLILDLTSRSRATVTQGTCGFCTLEGNCLF--QR 481
           S+Q     AVS +++ T   + +H    I+ L   S  +  +G C     E +C      
Sbjct: 596 SLQKRSKRAVSLVERFTEEEIKLH----IMSLKKPSTQSAVEGMCDLKEEEESCQLCDDG 651

Query: 482 FLRFNPKPIY 511
            L F P+P+Y
Sbjct: 652 TLLFPPQPLY 661


>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 482

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +1

Query: 211 QEPLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTV 390
           Q P     GD    A  TADH IL + I        + +  +VT+  N++ ++ HS    
Sbjct: 275 QAPTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAK 328

Query: 391 DTGLDQPIES 420
            T    P+E+
Sbjct: 329 ATEDAAPLEN 338


>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 743

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +1

Query: 211 QEPLWLYQGDNVPRAPSTADHPILPSKIDDVQLDPNRRYVRSVTNPENNEASIEHSHHTV 390
           Q P     GD    A  TADH IL + I        + +  +VT+  N++ ++ HS    
Sbjct: 536 QAPTVTQNGDGSSTASGTADHSILNADI------TTQVHTLTVTSSSNSQQAVSHSEVAK 589

Query: 391 DTGLDQPIES 420
            T    P+E+
Sbjct: 590 ATEDAAPLEN 599


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 458 EGNCLFQRFLRFNPKPIYIDMGNRYRRHASDDQEELRQ 571
           E NCL      F+P P+ + +  RY+R ASD+ + L++
Sbjct: 206 EINCLEWESFAFHPSPLVVLVFERYKR-ASDNWKTLKE 242


>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
           identical to actin-related protein 6 (ARP6) [Arabidopsis
           thaliana] GI:21427467; contains Pfam profile PF00022:
           Actin
          Length = 421

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 476 QRFLRFNPKPIYIDMGNRYRRHASD-DQEELRQYNEHFLIPRDIFQ 610
           +RFL  + K   + M     R  +D ++ E+   NE FL+P  +FQ
Sbjct: 263 KRFLSLSEKESVVVMDKVGERKKADMNKNEIDLTNERFLVPETLFQ 308


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 693  YHLNLSNYDSMNIGVHSEIFCFWNFPYSWKISLG 592
            +HL L++ +S NI   + I  F N P  W IS G
Sbjct: 2988 FHLKLNDTESANIAYSNAITLFKNLPKGW-ISWG 3020


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,727,342
Number of Sequences: 28952
Number of extensions: 372293
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)