Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J02
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1181 - 24985963-24986242,24987109-24987197                      120   1e-27
06_02_0140 + 12255418-12255512,12257514-12257793                      120   1e-27
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    103   2e-22

>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  120 bits (290), Expect = 1e-27
 Identities = 60/113 (53%), Positives = 76/113 (67%), Gaps = 2/113 (1%)
 Frame = +2

Query: 116 GKSAINAVVTRESTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVXTRLNKFL 295
           G +    VVTRE T+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RV  +LNK +
Sbjct: 7   GAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKLNKHI 66

Query: 296 WSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 448
           WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 67  WSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  120 bits (290), Expect = 1e-27
 Identities = 60/113 (53%), Positives = 78/113 (69%), Gaps = 2/113 (1%)
 Frame = +2

Query: 116 GKSAINAVVTRESTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVXTRLNKFL 295
           G +  + VVTRE T+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RV  +LNK +
Sbjct: 9   GGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVKLNKHI 68

Query: 296 WSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 448
           WS G+R+VP           ND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 69  WSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  103 bits (247), Expect = 2e-22
 Identities = 57/122 (46%), Positives = 75/122 (61%), Gaps = 18/122 (14%)
 Frame = +2

Query: 137 VVTRESTVNLHKRLHGV----------------GFKKRAPXAIKEIRKFAEKQMGTPDIR 268
           VVTRE T+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT DIR
Sbjct: 15  VVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTDIR 74

Query: 269 VXTRLNKFLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTEN 442
           +  +LNK +W+ G+R+VP           ND+ED+  +L++LVT   +P   +KGL T+ 
Sbjct: 75  IDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGTKV 134

Query: 443 VD 448
           V+
Sbjct: 135 VE 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,878
Number of Sequences: 37544
Number of extensions: 272363
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)