Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_J02
         (920 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B) ribo...   118   4e-27
At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)           118   7e-27
At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)           116   2e-26

>At4g26230.1 68417.m03776 60S ribosomal protein L31 (RPL31B)
           ribosomal protein L31, Nicotiana glutinosa, U23784
          Length = 119

 Score =  118 bits (285), Expect = 4e-27
 Identities = 58/115 (50%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
 Frame = +2

Query: 110 SKGKSAINAVVTRESTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVXTRLNK 289
           S+ K     VVTRE T+NLH+RLH   FKK+AP AIKEIRKFAEK+MGT D+RV  +LNK
Sbjct: 2   SEKKGRKEEVVTREYTINLHRRLHSCTFKKKAPKAIKEIRKFAEKEMGTKDVRVDVKLNK 61

Query: 290 FLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 448
            +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 62  QIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIE 116


>At2g19740.1 68415.m02306 60S ribosomal protein L31 (RPL31A)
          Length = 119

 Score =  118 bits (283), Expect = 7e-27
 Identities = 58/117 (49%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
 Frame = +2

Query: 113 KGKSAINAVVTRESTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVXTRLNKF 292
           KGK     VVTRE T+NLH+RLH   FKK+AP AIKEIRKFA K MGT D+RV  +LNK 
Sbjct: 3   KGKGRKEEVVTREYTINLHRRLHSCTFKKKAPNAIKEIRKFALKAMGTKDVRVDVKLNKQ 62

Query: 293 LWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVDASQ 457
           +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++  +
Sbjct: 63  IWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119


>At5g56710.1 68418.m07078 60S ribosomal protein L31 (RPL31C)
          Length = 119

 Score =  116 bits (279), Expect = 2e-26
 Identities = 57/115 (49%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
 Frame = +2

Query: 110 SKGKSAINAVVTRESTVNLHKRLHGVGFKKRAPXAIKEIRKFAEKQMGTPDIRVXTRLNK 289
           S+ K     V+TRE T+NLH+RLH   FKK+AP AIKEIRKFAEK MGT D+RV  +LNK
Sbjct: 2   SEKKGRKEEVITREYTINLHRRLHKCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNK 61

Query: 290 FLWSKGVRNVPFXXXXXXXXXXNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 448
            +WSKG+R  P           NDDED+  + F+LVT   +P   + GL T+ ++
Sbjct: 62  QIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIE 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,000,241
Number of Sequences: 28952
Number of extensions: 226080
Number of successful extensions: 392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)