Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I24
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0558 - 25606718-25606724,25606918-25606995,25608552-256086...    30   2.9  
01_07_0206 + 41990251-41992032,41992131-41992361                       29   3.8  
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    29   5.0  
08_01_1058 + 10765837-10766325                                         28   8.8  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.8  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    28   8.8  

>03_05_0558 -
           25606718-25606724,25606918-25606995,25608552-25608665,
           25608755-25609266
          Length = 236

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -1

Query: 594 DGTLP-GRRRL-VFCDRIPSRPYRRLRGGCSCQDPTXXXXXXSFQICLRSVYLYQ*QLPH 421
           DG  P G +RL VF D  P R    L G C+C D          Q+C R + +      +
Sbjct: 127 DGERPFGSQRLRVFIDSAPGR----LIGICACNDEKLGHSGYLLQLCGR-LGVLDGNWEY 181

Query: 420 SYWPSLDVHRSLYC 379
           +Y   LDV +  YC
Sbjct: 182 NYVALLDVPKQNYC 195


>01_07_0206 + 41990251-41992032,41992131-41992361
          Length = 670

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
 Frame = +1

Query: 148 YWEDXXGYPVSGQFSKRHPRDVTWDKQVGG-----GKVFGTLGQNDDGLFGKAGYNREIF 312
           Y  D  G P+    S+R  R   W++Q+GG      +++G     D  L     +NR+  
Sbjct: 216 YQFDGEGKPMEDFDSERSRRACLWERQIGGRGDDVNELYGPSSCKD--LLTLYNFNRQYV 273

Query: 313 NDDRGKLTGQA 345
           N D+  L+ QA
Sbjct: 274 NMDKTWLSKQA 284


>01_03_0256 +
           14288885-14288936,14289362-14291335,14291648-14291673,
           14291855-14292025,14292560-14292647,14292711-14292802,
           14292920-14293384,14293860-14294633,14294890-14295087,
           14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 497 GS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVP 592
           GS Q +  L RRYG + +    T +++PG VP
Sbjct: 322 GSLQYYQRLGRRYGNKSLEVNATSQKKPGVVP 353


>08_01_1058 + 10765837-10766325
          Length = 162

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 476 SNRLRSVGS*QEHPPLSRRY-GLEGIRSQKTRRRR-PGRVPS*LVIXKIP---SRHHR 634
           SN  RS+ S    PP ++R   L    S + RRRR PG     +V+  +P   S+HHR
Sbjct: 18  SNAARSILSASAAPPPAKRAPSLPAAPSAQCRRRRPPGSAVIIVVLTALPSSSSQHHR 75


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 381  STNYGGRLDWANKNAEAAIDINRQI 455
            S+ +GG L W N + E+ +D +RQ+
Sbjct: 960  SSLHGGSLPWKNTDFESTVDFDRQL 984


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +2

Query: 476 SNRLRSVGS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS*LVIXKIPSRHHRSKHNLLP 655
           S R+ S     + PP+ RR     IR   T  RRPG  P        P R  RS  +L P
Sbjct: 274 SRRVESPRCRPDSPPIRRRTAPSPIRHGGTPSRRPGS-PIRRRSPSPPPRRLRSPRHLSP 332

Query: 656 KK 661
           ++
Sbjct: 333 RR 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,892,079
Number of Sequences: 37544
Number of extensions: 420911
Number of successful extensions: 1136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)