Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I24
         (897 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)            30   2.2  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = +2

Query: 506 QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS*LVIXKIPSRHHRS 637
           + H P   R      RS+  RRRR  R P      + PS HHRS
Sbjct: 212 RSHSPAHHRRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRS 255


>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
          Length = 1439

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = -3

Query: 586 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 407
           S + P+SG+  P      PP+   VF S S  P PV   P  PP  +F   A S+ +   
Sbjct: 424 SVFAPSSGV--PTPVAAPPPS---VFASSSGVPTPVTAPPPAPPPSVF---APSSGVPTP 475

Query: 406 SRRPP*FVLSP 374
              PP  V +P
Sbjct: 476 VAAPPPSVFAP 486



 Score = 29.5 bits (63), Expect = 3.9
 Identities = 24/71 (33%), Positives = 33/71 (46%)
 Frame = -3

Query: 586 SAWTPTSGLL*PNSFETIPPAERRVFLSRSHTPEPVAVIPDLPPICLFISIAASAFLLAQ 407
           S +  +SG+  P   +  PP+   VF S S  P PVA  P  PP  +F   A S+ +   
Sbjct: 366 SVFASSSGV--PTPVKAPPPS---VFASSSGVPTPVAAPPPAPPPSVF---APSSGVPTP 417

Query: 406 SRRPP*FVLSP 374
              PP  V +P
Sbjct: 418 VAAPPPSVFAP 428



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 586 SAWTPTSGLL*PNSFETIPPAER-RVFLSRSHTPEPVAVIPDLPPICLFISIAA 428
           S + P+SG+  P      PPA    VF   S  P PV   P  PP  +F   +A
Sbjct: 522 SVFAPSSGV--PTPVTEPPPAPPPSVFAPSSGVPTPVTAPPPAPPPSVFAPSSA 573


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 473  DSNRLRSVGS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVPS 595
            D+ +LR V    E PPL  RYG  G+  +K R R PG+ P+
Sbjct: 2322 DAIKLRRVPLKAEKPPLRGRYG--GVHRRK-RGRPPGQGPT 2359


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +1

Query: 226 QVGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAY 348
           Q G G  FGT      GLFG AG N        G +TG  +
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMF 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,519,205
Number of Sequences: 59808
Number of extensions: 462859
Number of successful extensions: 1088
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)