Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I23
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    29   6.8  
06_03_0905 + 25843547-25844314                                         28   9.0  

>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 808 GXXGPXXXPXKXXRPXPPGTXGFAXXGPPXXXPPP 912
           G  GP     +  +  PPG   F    PP   PPP
Sbjct: 47  GGNGPVPSSIRAPQAPPPGARPFPGSPPPPSQPPP 81


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 17/58 (29%), Positives = 17/58 (29%)
 Frame = +1

Query: 739 PXXPXXXPLPXPXXXXFXVSXXXGXXGPXXXPXKXXRPXPPGTXGFAXXGPPXXXPPP 912
           P  P     P P      V       GP   P     P PP T      GPP   P P
Sbjct: 67  PTYPSPVTRPPPLVAPPKVPVTHPPKGPVTRPPPVTYPTPPVTTPPVVVGPPVTYPTP 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,236,595
Number of Sequences: 37544
Number of extensions: 278116
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)