Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I23
         (916 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    28   8.1  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    28   8.1  
AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen prot...    28   8.1  

>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 808 GXXGPXXXPXKXXRPXPPGTXGFAXXGPPXXXP 906
           G  G    P +   P PPG  G    GPP   P
Sbjct: 120 GRDGRPGAPGRPGNPGPPGRDGALLPGPPPKPP 152


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 388 YILKLTSRFNNTSIYGIRFKDHFPIALAEPRTSIAGPALTMP 263
           ++L L+      S Y +  K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


>AF000198-8|AAP68908.1|  435|Caenorhabditis elegans Collagen protein
           51 protein.
          Length = 435

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +1

Query: 808 GXXGPXXXPXKXXRPXPPGTXGFAXXGPPXXXPPP 912
           G  GP   P     P   G+ G A  GPP    PP
Sbjct: 249 GGPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPP 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,954,768
Number of Sequences: 27780
Number of extensions: 223724
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)