Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I22
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.17 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.2  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.9  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    27   4.9  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 22/77 (28%), Positives = 28/77 (36%)
 Frame = +1

Query: 670  ALPXPXGASXXDEPPTSSXGHRTPYDEPDXHAGXSPHPXXFVPWVXXPXXGGXIPMSTXX 849
            ++P P GA     PP  +     P  +P   A   P P   VP V  P     +P  +  
Sbjct: 1075 SIPAPSGA-----PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPS-V 1128

Query: 850  XXPPPXXPPPXPXXPXP 900
              PP   P   P  P P
Sbjct: 1129 AAPPVPVPSGAPPVPKP 1145



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/73 (26%), Positives = 21/73 (28%)
 Frame = +1

Query: 682  PXGASXXDEPPTSSXGHRTPYDEPDXHAGXSPHPXXFVPWVXXPXXGGXIPMSTXXXXPP 861
            P  A     PP        P   P   A   P P   VP V  P     +P  +    P 
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229

Query: 862  PXXPPPXPXXPXP 900
            P      P  P P
Sbjct: 1230 PVPTAKAPPVPAP 1242



 Score = 26.2 bits (55), Expect = 6.4
 Identities = 22/79 (27%), Positives = 26/79 (32%)
 Frame = +1

Query: 664  AGALPXPXGASXXDEPPTSSXGHRTPYDEPDXHAGXSPHPXXFVPWVXXPXXGGXIPMST 843
            A  +P P GA    +P  ++     P   P       P P    P V  P  G  IP   
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV-----PKPSVAAPPVPAPSSG--IPPVP 1182

Query: 844  XXXXPPPXXPPPXPXXPXP 900
                  P  PPP    P P
Sbjct: 1183 KPAAGVPPVPPPSEAPPVP 1201


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/90 (27%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
 Frame = +1

Query: 652 RXGXAGALPXPX-GASXXDEPP---TSSXGHRTPYDEPDXHAGXSPHPXXFVPW---VXX 810
           R   AG++P P  G S    PP     S G + P           P P   +P       
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403

Query: 811 PXXGGXIPMSTXXXXPPPXXPPPXPXXPXP 900
           P  G     ST     PP  PP  P    P
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 709 PPTSSXGHRTPYDEPDXHAGXSPHPXXF 792
           P T   GH TP+ + D H G   H   F
Sbjct: 137 PDTPDSGHSTPHSKGDVHPGMPQHNTRF 164


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 855  PPXXPPXPXPGSSXPLXP 908
            PP  PP P P SS P  P
Sbjct: 1727 PPSAPPPPLPASSAPSVP 1744


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 551 GXAQGCGAGARMASKYPAARPPSP 622
           G +QG G GA +A      +PP+P
Sbjct: 110 GFSQGAGIGAMLAQMLQPGQPPNP 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,845
Number of Sequences: 5004
Number of extensions: 39972
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)