Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I21
         (909 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.72 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 724 PPXPXPPPXPP 756
           PP P PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 13/39 (33%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
 Frame = +1

Query: 658 STXFP*XPPAPTXXPPLXTLSXPPXPX---PPPXPPEXP 765
           S+  P   P+P   P       PP P    PP  PP  P
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 679 PPAPTXXPPLXTLSXPPXPXPPPXPP 756
           P AP    P      PP   PP  PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +3

Query: 681 PXPHXXPSPXXPFXXPRPYXXSPPPXAPHXP 773
           P PH  P        P P    PP   P  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,136
Number of Sequences: 438
Number of extensions: 4601
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)