Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_I19
(927 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 77 3e-15
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 77 3e-15
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.019
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.70
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.93
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.6
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 77.4 bits (182), Expect = 3e-15
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2
Query: 110 LGAXXXXQXLYXXKLSXVMRFLLRVXVWQYRQLTRMHRAPRPTRPDKARXLGYRAKQGYV 289
+GA + L K S V FL RV W+YRQ+ +HRA RP+RPDKAR LGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 290 VFR 298
++R
Sbjct: 61 IYR 63
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 77.4 bits (182), Expect = 3e-15
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +2
Query: 110 LGAXXXXQXLYXXKLSXVMRFLLRVXVWQYRQLTRMHRAPRPTRPDKARXLGYRAKQGYV 289
+GA + L K S V FL RV W+YRQ+ +HRA RP+RPDKAR LGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 290 VFR 298
++R
Sbjct: 61 IYR 63
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.019
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Frame = +3
Query: 792 PPPXPXXXXXPXXXPXPXXPPXXXXXXXPPXXPPP----XXPPPXXP 920
PPP P P P PP PP PPP PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = +3
Query: 792 PPPXPXXXXXPXXXPXPXXPPXXXXXXXPPXXPPPXXPPP 911
P P P P P PP P PPP PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP--PPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.70
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 783 PXXPPPXPXXXXXPXXXPXPXXPPXXXXXXXPPXXPPPXXPPPXXP 920
P PP P P PP PP PP PP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/40 (32%), Positives = 13/40 (32%)
Frame = +3
Query: 792 PPPXPXXXXXPXXXPXPXXPPXXXXXXXPPXXPPPXXPPP 911
P P P P P PP P PPP PP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +3
Query: 792 PPPXPXXXXXPXXXPXPXXPPXXXXXXXPPXXPPPXXPPPXXP 920
P P P P P PP PP P PP P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +3
Query: 792 PPPXPXXXXXPXXXPXPXXPPXXXXXXXPPXXPPPXXPPPXXP 920
P P P P P P PP PP PP P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 1/51 (1%)
Frame = +3
Query: 762 PXXXXXXPXXPPPXPXXXXXPXXXPXP-XXPPXXXXXXXPPXXPPPXXPPP 911
P P PPP P P P PP PP P PP
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +3
Query: 792 PPPXPXXXXXPXXXPXPXXPPXXXXXXXPPXXPPPXXPPP 911
P P P P P PP PP P PP
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPP 1132
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/40 (30%), Positives = 12/40 (30%)
Frame = +3
Query: 792 PPPXPXXXXXPXXXPXPXXPPXXXXXXXPPXXPPPXXPPP 911
PP P P PP P PPP PP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 822 PXXXPXPXXPPXXXXXXXPPXXPPPXXPP 908
P P P PP PP PPP PP
Sbjct: 5 PPGNPPPPPPPPGFE---PPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,195,632
Number of Sequences: 5004
Number of extensions: 16790
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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