Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I18
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...   122   7e-29
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    26   8.6  

>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score =  122 bits (294), Expect = 7e-29
 Identities = 53/80 (66%), Positives = 63/80 (78%)
 Frame = +2

Query: 83  LAIXLLHPSPASXRXXXKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQXVVVCAGCSTI 262
           LA+ LL+PS  S     KLK+LV  P S+FMDVKCPGC+  TTVFSHAQ VV+C  C+++
Sbjct: 3   LAVDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASV 62

Query: 263 LCQPTGGRARLTEGCSFRRK 322
           LCQPTGG+ARL EGCSFRRK
Sbjct: 63  LCQPTGGKARLMEGCSFRRK 82


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 238 HHXLCVTKNCCXLVTARALNIHEIRVRMWHXPLK 137
           +H L   ++ C L  ++ L+ H I +R W   +K
Sbjct: 37  YHALKAKESTCFLTFSKTLDEHAISMRKWGMDIK 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,051,019
Number of Sequences: 5004
Number of extensions: 28186
Number of successful extensions: 46
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)