Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I18
         (918 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)           123   2e-28
At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A) iden...   120   2e-27
At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)           114   9e-26
At2g44870.1 68415.m05586 expressed protein                             29   3.3  

>At5g47930.1 68418.m05921 40S ribosomal protein S27 (RPS27D)
          Length = 84

 Score =  123 bits (296), Expect = 2e-28
 Identities = 53/78 (67%), Positives = 60/78 (76%)
 Frame = +2

Query: 89  IXLLHPSPASXRXXXKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQXVVVCAGCSTILC 268
           I LLHP P   +   KLKRLV  PNS+FMDVKC GC+  TTVFSH+Q VVVC  C T+LC
Sbjct: 7   IDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLC 66

Query: 269 QPTGGRARLTEGCSFRRK 322
           QPTGG+ARL EGCSFR+K
Sbjct: 67  QPTGGKARLQEGCSFRKK 84


>At3g61110.1 68416.m06839 40S ribosomal protein S27 (ARS27A)
           identical to cDNA ribosomal protein S27 (ARS27A)
           GI:4193381
          Length = 86

 Score =  120 bits (288), Expect = 2e-27
 Identities = 53/78 (67%), Positives = 60/78 (76%)
 Frame = +2

Query: 89  IXLLHPSPASXRXXXKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQXVVVCAGCSTILC 268
           I LL+P     +   KLKRLV  PNS+FMDVKC GC+  TTVFSH+Q VVVC  C TILC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILC 66

Query: 269 QPTGGRARLTEGCSFRRK 322
           QPTGG+A+LTEGCSFRRK
Sbjct: 67  QPTGGKAKLTEGCSFRRK 84


>At2g45710.1 68415.m05685 40S ribosomal protein S27 (RPS27A)
          Length = 84

 Score =  114 bits (274), Expect = 9e-26
 Identities = 49/78 (62%), Positives = 59/78 (75%)
 Frame = +2

Query: 89  IXLLHPSPASXRXXXKLKRLVPHPNSYFMDVKCPGCYKXTTVFSHAQXVVVCAGCSTILC 268
           I LL+P     +   KLKRLV  PNS+FMDVKC GC+  TTVFSH+Q VV+C  C T+LC
Sbjct: 7   IDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLC 66

Query: 269 QPTGGRARLTEGCSFRRK 322
            PTGG+A+LTEGCSFR+K
Sbjct: 67  TPTGGKAKLTEGCSFRKK 84


>At2g44870.1 68415.m05586 expressed protein
          Length = 248

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 161 NSYFMDVKCPGCYKXTTVFSHAQXVVVCAGCSTILCQPTG 280
           N++ +  +CP C +      +   ++ C GC  I+ QP G
Sbjct: 175 NNFVIKGECPACKRQ--FIGYKNQIIRCEGCGNIVWQPQG 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,382,961
Number of Sequences: 28952
Number of extensions: 167473
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2178500352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)