Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I17
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    29   0.89 
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc...    29   0.89 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   6.3  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    26   8.3  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 627 MRVQIKHLIHSIFKKVQLRTKTKKNIKIRNWRRYYTITHKNEALKINKLHFILFK 463
           MR +I ++   IF+KVQL T  +   +    R Y+ +   +EA  +N   ++ F+
Sbjct: 238 MRARIYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLVNWRKYLDFE 292


>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
           kinase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 340

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
 Frame = +3

Query: 48  FSFAKISGCLI*FGSDIMKTTQVAQYALRLTYS--QQANREKMMTRSALLLATIGLGLST 221
           + F  +SG     G D+     +A+Y   L     QQ++  K   R  +L   +G  LS 
Sbjct: 217 YQFPSLSGVFTGTG-DLFSGLLLAKYREELDKRKHQQSDETKQTKRPTVLACAVGQVLSC 275

Query: 222 FSVRQMILNQSRRV*DKPVLPQQPAGASLSQTIDNAKTKRLLKKNS*MHPRRAIY 386
                 +L  ++   D+ +L + P  AS    + NA+  RL++  + +  +++IY
Sbjct: 276 MHT---VLVNTKTYADE-ILLEDPKIASDEFLLSNARELRLIQSRTALLSKKSIY 326


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 21  HYREFLKICFSFAKISGCLI*FGSDIMKTTQVAQYAL 131
           HY E   ICF FAK   C +          Q   YA+
Sbjct: 283 HYSENAPICFEFAKYGFCELGTSCKNQHILQCTDYAM 319


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 669 NVYXYLASITTVVNMRVQIKHLIHS 595
           NV  ++ SI+  VN+R   KHL HS
Sbjct: 92  NVSNHVPSISKTVNIRETSKHLKHS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,246
Number of Sequences: 5004
Number of extensions: 53743
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)