Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I15
         (851 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   3.6  

>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +3

Query: 738 PSSLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
           P S P PP   P    P     P   P P   PP PP
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPP 411



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +3

Query: 738 PSSLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
           P   P PP   P    P  S  P   P P   PP PP
Sbjct: 369 PPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPP 405



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +3

Query: 738 PSSLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
           PS  P PP   P    P     P   P P   PP PP
Sbjct: 376 PSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPP 412



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 738 PSSLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
           P   P PP   P    P     P   P P   PP PP
Sbjct: 374 PPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPP 410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,022,557
Number of Sequences: 59808
Number of extensions: 166139
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)