Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_I15
(851 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 31 1.3
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 30 1.7
At1g49750.1 68414.m05579 leucine-rich repeat family protein cont... 30 2.2
At1g20130.1 68414.m02518 family II extracellular lipase, putativ... 29 3.0
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 28 6.9
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 28 6.9
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 28 9.1
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Frame = +3
Query: 738 PSSLPXPP---XXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
PSSLP PP P PS P P P PP PP
Sbjct: 1088 PSSLPPPPPAALFPPLPPPPSQPPPPPLSPPPSPPPPPPP 1127
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Frame = +3
Query: 738 PSSLPXPPXXXPX*XCPS--XSHXPXXXPXPCXXPPXPP 848
P SLP PP P P S P P P PP PP
Sbjct: 404 PPSLPSPPPPAPIFSTPPTLTSPPPPSPPPPVYSPPPPP 442
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 744 SLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
S P PP P P H P P PP PP
Sbjct: 561 SSPPPPHSSPPPHSPPPPHSPPPPIYPYLSPPPPP 595
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 738 PSSLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
P P PP P P P P P PP PP
Sbjct: 471 PPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPPPP 507
>At1g49750.1 68414.m05579 leucine-rich repeat family protein
contains leucine-rich repeats, Pfam:PF00560
Length = 494
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 738 PSSLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
P+ P PP P CP P P PC PP PP
Sbjct: 58 PADCPPPPPPPP---CP-----PPPSPPPCPPPPSPP 86
>At1g20130.1 68414.m02518 family II extracellular lipase, putative
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase; similar to EXL3 (PMID:11431566)
Length = 1006
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = +1
Query: 670 PXXPXXSPQLXTRPLRCPHXXRXXAPCPXPLXXXXXXCAHXCXTCPXPXXLXAXXPXPPP 849
P P +P +P+ CP + AP P P+ H P P A P P P
Sbjct: 82 PPEPKPAPPPAPKPVPCPSPPKPPAPTPKPVP------PHGPPPKPAPAPTPAPSPKPAP 135
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/40 (35%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Frame = +3
Query: 738 PSSLPXPPXXXPX*XCP---SXSHXPXXXPXPCXXPPXPP 848
P+ P PP P P + P P PC PP PP
Sbjct: 66 PACPPTPPKPQPKPAPPPEPKPAPPPAPKPVPCPSPPKPP 105
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = +3
Query: 666 PPPXTXXIXTAVXXXTTLSTXXXXPSSLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXP 845
P P T + S P P PP P P+ P P P PP P
Sbjct: 80 PIPSTPSTPSPPPPAPKKSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSPPPTPSLPPPAP 139
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 750 PXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXPP 848
P PP P P SH P P P PP PP
Sbjct: 24 PPPPSLPPPVPPPPPSHQPYSYPPP---PPPPP 53
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = +3
Query: 666 PPPXTXXIXTAVXXXTTLSTXXXXPSSLPXPPXXXPX*XCPSXSHXPXXXPXPCXXPPXP 845
PPP I T S P P P P + H P P PP P
Sbjct: 101 PPPPLSAITTTGHHHHRRSPPPPPPPPPPPPTITPPVTTTTAGHHHHRRSPPPPPPPPPP 160
Query: 846 P 848
P
Sbjct: 161 P 161
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,596,885
Number of Sequences: 28952
Number of extensions: 122428
Number of successful extensions: 346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -