Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I14
         (910 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   187   2e-48
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   6.4  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  187 bits (455), Expect = 2e-48
 Identities = 84/147 (57%), Positives = 109/147 (74%)
 Frame = +2

Query: 152 RTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSQELLQQHYSDLASRPFFPGLV 331
           +TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS++L+++HY++   +PF+  LV
Sbjct: 5   QTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLV 64

Query: 332 KYMSSGPVVPMVWEGLNVVKTGRHMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVES 511
            +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+ES
Sbjct: 65  GFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIES 124

Query: 512 AKKEIGLWFTDXEVVGWTPANENWVYE 592
           A +EI LWF   E+  +    E W+YE
Sbjct: 125 ANREIKLWFQPSEIQVYDRTIEPWIYE 151


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 234 KPFFSKRSIMVPTRPRCTPSGLT 166
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,450
Number of Sequences: 5004
Number of extensions: 44591
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)