Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_I14
(910 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 205 4e-53
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 197 1e-50
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 196 3e-50
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 193 2e-49
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 28 8.9
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 205 bits (500), Expect = 4e-53
Identities = 91/146 (62%), Positives = 111/146 (76%)
Frame = +2
Query: 152 RTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSQELLQQHYSDLASRPFFPGLV 331
RTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL RPFF GL
Sbjct: 47 RTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPFFNGLC 106
Query: 332 KYMSSGPVVPMVWEGLNVVKTGRHMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVES 511
++SSGPV+ MVWEG V+K GR ++GAT+P S+PGTIRGDL + VGRNIIHGSD E+
Sbjct: 107 DFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPET 166
Query: 512 AKKEIGLWFTDXEVVGWTPANENWVY 589
AK EIGLWF E+V +T E W+Y
Sbjct: 167 AKAEIGLWFEPRELVSYTSNEEKWIY 192
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 197 bits (480), Expect = 1e-50
Identities = 87/147 (59%), Positives = 112/147 (76%)
Frame = +2
Query: 152 RTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSQELLQQHYSDLASRPFFPGLV 331
++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ + QQHY+DL+ +PFFPGLV
Sbjct: 3 QSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLV 62
Query: 332 KYMSSGPVVPMVWEGLNVVKTGRHMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVES 511
+Y+ SGPVV MVWEG +VV TGR ++GAT P ++ PGTIR D ++VGRN+IHGSDSV++
Sbjct: 63 EYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDN 122
Query: 512 AKKEIGLWFTDXEVVGWTPANENWVYE 592
KKEI LWF + + W W+YE
Sbjct: 123 GKKEIALWFPEG-LAEWRSNLHPWIYE 148
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 196 bits (477), Expect = 3e-50
Identities = 85/147 (57%), Positives = 111/147 (75%)
Frame = +2
Query: 152 RTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSQELLQQHYSDLASRPFFPGLV 331
+TFIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GLV
Sbjct: 5 QTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGLV 64
Query: 332 KYMSSGPVVPMVWEGLNVVKTGRHMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVES 511
+Y+ SGPVV MVWEG VV TGR ++GATNP ++PGTIRGD + +GRN+IHGSDSVE+
Sbjct: 65 EYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSVEN 124
Query: 512 AKKEIGLWFTDXEVVGWTPANENWVYE 592
A+KEI LWF + + W W+YE
Sbjct: 125 ARKEIALWFPEG-IAEWRSNQHPWIYE 150
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 193 bits (470), Expect = 2e-49
Identities = 83/147 (56%), Positives = 109/147 (74%)
Frame = +2
Query: 152 RTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSQELLQQHYSDLASRPFFPGLV 331
+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL+
Sbjct: 4 QSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGLI 63
Query: 332 KYMSSGPVVPMVWEGLNVVKTGRHMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVES 511
+Y++SGPVV M WEG VV + R ++GATNP ++PGTIRGDL +Q GRN++HGSDS ++
Sbjct: 64 EYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPDN 123
Query: 512 AKKEIGLWFTDXEVVGWTPANENWVYE 592
K+EI LWF + E+ W W+ E
Sbjct: 124 GKREIALWFKEGELCEWESVLTPWLVE 150
>06_03_0999 -
26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 28.3 bits (60), Expect = 8.9
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 137 QEXRXRTFIMVKPDGVQRGLV-GTIIERFEKKGFKLVGLKFVWPSQELLQQHYSD--LAS 307
QE R ++KP+ R L G+ ++F +KL+G+K +PSQ++ + SD L S
Sbjct: 630 QELAERQLDVIKPNLQSRMLKEGSEYDQF----WKLLGVKSEYPSQKIAKDQESDPHLFS 685
Query: 308 RPFFPGLVK 334
F G++K
Sbjct: 686 CTFSKGVLK 694
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,907
Number of Sequences: 37544
Number of extensions: 298739
Number of successful extensions: 680
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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