Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I13
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    28   9.4  
At5g24040.1 68418.m02824 F-box family protein similar to unknown...    28   9.4  
At4g17620.1 68417.m02636 glycine-rich protein                          28   9.4  

>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 258 IEASKDCYTNMKAYENFMMMYKVGFLPKNLEFS 356
           I  +K C    KA E F  MYK G +P  + +S
Sbjct: 228 ITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYS 260


>At5g24040.1 68418.m02824 F-box family protein similar to unknown
           protein (gb|AAD22308.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 373

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 443 CFVETFKIFGIIEQLEQRDGFXPHFFVKDREFQILGKES 327
           C+ E F++F  I + E+R GF      K+ E+ ILGK S
Sbjct: 137 CYSEWFELFECISKCEERIGFMGLNREKN-EYMILGKLS 174


>At4g17620.1 68417.m02636 glycine-rich protein
          Length = 544

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 631 NEXICYNYGIIKENEQFVM 687
           +E +C+ YG +KENE +++
Sbjct: 487 DEVLCWLYGTVKENEDYIL 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,015
Number of Sequences: 28952
Number of extensions: 243486
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)