Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_I12
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 30 0.39
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 30 0.39
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 28 1.6
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 28 1.6
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 28 2.1
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 2.1
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 2.7
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 27 2.7
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 27 2.7
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 27 4.8
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 6.3
SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 6.3
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 26 8.4
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 8.4
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 26 8.4
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 30.3 bits (65), Expect = 0.39
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 471 SIEIPGSNEPNKTVVISYDICAYGKSPGHSEVTFNVTPPGFVNLDTVY 614
S+ I G + + +++ SY + Y + TF +P GFVN VY
Sbjct: 197 SLSIDGDDSFHPSLIESYQVGGYDGVSIPTPATFGGSPSGFVNAPLVY 244
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 106 YSYCXSNFYSNKLYL*LNSVFVFCERAVNRSRWRNV 213
Y + N YS ++L + VFC VN RW N+
Sbjct: 382 YDHKFRNLYSPNIFLSIVQALVFCGDMVNIQRWYNM 417
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 599 LRHSVPTYNRHALQR-NKHNIVHNGLDILRGLVSFVLPSNIHKLQ 730
+ HS+P H L+ HN N +D+L ++++V I ++
Sbjct: 258 VNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPSKRISAIE 302
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 690 WSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFN 809
W V PQI N++ KS GL+ F+ ++ S++N
Sbjct: 30 WCVQLIPQIIKNYRAKSTEGLDTLFILSWVVASIPLSVYN 69
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 666 MGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMG--FTMYSL 803
MG + ++ F PQ F+ ++V G+++ FLA++ G F+ SL
Sbjct: 145 MGVLATVLVNIGFLPQYISIFRARAVTGISYLFLAIDSSGSLFSFLSL 192
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 617 TYNRHALQRNKHNIVHNGLDILRGLVSFVLPSNIHKLQ 730
+Y H L R +H+I+ N L+ + FV +N +Q
Sbjct: 539 SYGNHVLNRIQHDILENHFCCLKNVKDFVCGANTISMQ 576
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 686 GLVSFVLPSNIHKLQKEKRSRSQLRFSGAKHN 781
G V++ SN+HK KEK SQ+R + K N
Sbjct: 643 GRVAYSRISNLHKSSKEKGKDSQVRVALHKEN 674
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/82 (26%), Positives = 32/82 (39%)
Frame = +3
Query: 288 LILGIPSAHSQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVP 467
LILGIPS +Y + ++ E T + K S ++N P +
Sbjct: 792 LILGIPSLQLVRPDIYDSIREMIASNENTEVEK-----DKLDSFSALANPASPKAPEYTF 846
Query: 468 PSIEIPGSNEPNKTVVISYDIC 533
SI +P N PN I +C
Sbjct: 847 VSIHVPPLNVPNAEGEIEESVC 868
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 636 SNEINIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMG 785
+N + +S +G + W V PQ+ N+K +S ++ FL + ++G
Sbjct: 11 ANILTELSSFLGALSLGCWVVLLIPQLLENYKNQSGESISDLFLIIWLIG 60
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +2
Query: 524 RYMRVRKES-GTFGSDVQCY---TARFCQLR--HSVPTYNRHAL 637
RY VR GTFG +QCY T R C ++ ++P Y +L
Sbjct: 361 RYTVVRLLGHGTFGKVIQCYDQSTGRHCAIKVTRAIPKYREASL 404
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 660 YIMGWIYFAAWSVSFYPQIYINFKRKSVVGL 752
Y++ W+ AAW + Y + Y ++R +++GL
Sbjct: 102 YVLFWLSMAAWVLQLYARSY--WQRDTLLGL 130
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 826 RKYSPQLKSEYMVKPI-MFSARKSKLRPTTLFLLKFM 719
RKY P L+S I F +K++LR T+ +LLK M
Sbjct: 188 RKYDPFLRSRMFTLTIRYFLLQKNRLR-TSFYLLKHM 223
>SPBC18H10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 348 DLNLLVEETRLLKLVQIGQYNTSLEVISNIQH 443
DLNL V +L LVQ GQ L I + H
Sbjct: 358 DLNLQVYHEKLRNLVQQGQAAECLNTIKRMSH 389
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 348 DLNLLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVPPSIEI 482
DL++LV E L L + + EVI HPD L+ +I
Sbjct: 439 DLDILVTEQGLADLRGLSPTERAREVIDKCAHPDYKPLLREYFDI 483
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.8 bits (54), Expect = 8.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 815 TVFSKEIQNEYFSRHPRGLNPVQLNDV 895
+VFS+E+Q +Y R G V NDV
Sbjct: 547 SVFSEEVQEDYDERQFTGEAAVSANDV 573
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 171 VL*TSGKQITMA--ECSAVLRPRAAACSISSHRIRFCLVVMLILGIPSAH-SQLDKM 332
VL TS ++++ +C+A+ + A + S R L V LI P+AH SQ+ +
Sbjct: 301 VLVTSPEEVSQVIEQCNAIRKTAATDFNTYSSRSHAILQVFLIRNNPTAHTSQISSL 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,523,466
Number of Sequences: 5004
Number of extensions: 74667
Number of successful extensions: 206
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -