Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_I12
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199... 84 1e-16
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913... 37 0.019
07_03_0368 + 17351199-17351351,17352166-17352243,17353774-173539... 31 1.6
03_02_0462 + 8669049-8669136,8669922-8670046,8670227-8670437,867... 29 3.8
06_03_0587 + 22555414-22557231 29 5.0
05_03_0340 + 12691974-12692155,12692248-12692312,12692816-126928... 29 6.6
01_06_0880 + 32687018-32687060,32687142-32687219,32687323-326875... 29 6.6
12_02_0855 + 23703827-23704019,23704465-23704481,23705051-237052... 28 8.8
11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195... 28 8.8
10_08_0176 + 15432092-15432470,15432592-15432688,15432801-154329... 28 8.8
09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304... 28 8.8
01_06_0892 + 32763195-32764149,32764489-32764575,32764665-327648... 28 8.8
>12_01_1021 -
10419383-10419529,10419684-10419733,10419821-10419938,
10420498-10420540,10420674-10420825,10420876-10420965,
10422881-10423013,10424397-10424515
Length = 283
Score = 84.2 bits (199), Expect = 1e-16
Identities = 32/60 (53%), Positives = 46/60 (76%)
Frame = +3
Query: 645 INIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFNCGLYF 824
+ ++ ++GW+ F AWS SFYPQ+++NFKRKSVVGLNFDFL LN+ + Y ++N L+F
Sbjct: 9 MEVLYQVLGWVAFFAWSFSFYPQVFLNFKRKSVVGLNFDFLVLNLTKHSSYLIYNAALFF 68
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 693 SVSFYPQIYINFKRKSVVGLNFDFLALNIMG 785
++ + PQ +NF+RKS +G + + L++ G
Sbjct: 173 AIKYIPQAIMNFRRKSTIGWSIGNILLDLTG 203
>01_01_1149 -
9134390-9134600,9134732-9134790,9135650-9135724,
9135815-9135934,9136012-9136183,9136277-9136335,
9136516-9136572,9136900-9136998,9137088-9137114,
9137607-9137649,9137779-9138023
Length = 388
Score = 37.1 bits (82), Expect = 0.019
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 666 MGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTMYSLFNCGL 818
+G + +W V+ PQI N+K KS GL+ FL I+G ++L C L
Sbjct: 43 LGLLSVISWGVAEVPQIITNYKHKSTEGLSLAFLMTWIVG-DFFNLIGCFL 92
>07_03_0368 +
17351199-17351351,17352166-17352243,17353774-17353927,
17353997-17354019,17354242-17354319,17354407-17354466,
17354745-17354805,17355080-17355243
Length = 256
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 645 INIISYIMGWIYFAAWSVSFYPQIYINFKRKSVVGLNFDFLALNIMGFTM 794
+ ++S I+G+ AA ++ PQI K SV GL+ L ++G+T+
Sbjct: 55 LRLMSKILGYHVVAASAIGKLPQILKILKHGSVRGLSVASFELEVVGYTI 104
>03_02_0462 +
8669049-8669136,8669922-8670046,8670227-8670437,
8670515-8670752,8671004-8671154,8671353-8671718
Length = 392
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 402 QYNTSLEVISNIQHPDIVQLVPPSIE 479
++ T + VISN++HP++V+L+ +E
Sbjct: 95 EFLTEINVISNVRHPNLVKLIGCCVE 120
>06_03_0587 + 22555414-22557231
Length = 605
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 551 GTFGSDVQCYTARFCQ--LRHSVPTYNRHALQRNKHNIVHNGL 673
GT G+ VQ R + L S+P RH Q K N+ HN L
Sbjct: 556 GTIGNLVQLNELRLDENNLSGSIPASIRHCTQLTKLNLAHNSL 598
>05_03_0340 +
12691974-12692155,12692248-12692312,12692816-12692861,
12692959-12693057,12693722-12693755,12694489-12694618,
12694795-12694855,12695495-12695591,12696843-12697022,
12697120-12697233,12697283-12697396
Length = 373
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 272 EAYSMTRNRARGCSRPQYC 216
E+Y RN+ARGCS YC
Sbjct: 182 ESYCHRRNQARGCSVENYC 200
>01_06_0880 +
32687018-32687060,32687142-32687219,32687323-32687532,
32687868-32689744
Length = 735
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 366 EETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVP 467
EET LLK+V+ NTS SN QH +V+ +P
Sbjct: 606 EETPLLKMVE----NTSSFSFSNEQHSKVVECIP 635
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 749 SQLRFSGAKHNGLHHVLAFQLWTVFSKEIQNEYFSRHPRGLNPVQL 886
S + +G K GL L++QL TV +++Q E R +P+QL
Sbjct: 415 SLVEVNGKKFTGLDSFLSYQLSTVNEEKVQTEVREGLFRPSSPLQL 460
>12_02_0855 +
23703827-23704019,23704465-23704481,23705051-23705254,
23705486-23705605,23705867-23706472
Length = 379
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -3
Query: 358 RFRSVTSTYILSNWECALGIPKINITTKQKRIL*LEIEHAAARGLNTALHS 206
R S T T L +C LG+ + + + + +EI H+ A GLN L++
Sbjct: 235 RSTSFTETVRLYGEKCGLGVKFLLLVNAVQATVDVEIIHSRACGLNLKLYA 285
>11_06_0409 -
23217558-23218355,23218808-23219297,23219515-23219591,
23219624-23219863,23220338-23220481,23220522-23220582,
23220875-23220934,23221097-23221192,23221306-23221398,
23221494-23221585
Length = 716
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 282 VMLILGIPSAHSQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQL 461
V L+ + + L ++ V ++ L+ E R + + +I + LE+ +IQH ++ L
Sbjct: 407 VSLVNLLKEGNRDLSELANLVQEIKRLLSERREVLVTKIHRSQNGLEIFRSIQHKNLANL 466
Query: 462 V 464
V
Sbjct: 467 V 467
>10_08_0176 +
15432092-15432470,15432592-15432688,15432801-15432985,
15433012-15433056,15433447-15433472,15435299-15435434,
15435608-15435702
Length = 320
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 530 MRVRKESGTFGSDVQCYTARFCQLRHSVPTY 622
M+++ SG FG DV+ Y C + + P Y
Sbjct: 217 MKLKVSSGEFGLDVEDYLTGLCFMSNDFPRY 247
>09_04_0609 -
18929600-18929646,18929753-18929924,18930304-18930498,
18930691-18930801,18930885-18931097,18931643-18931720,
18931894-18932001,18932175-18932316,18932413-18933761,
18934492-18935121
Length = 1014
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 315 SQLDKMYVEVTDLNLLVEETRLLKLVQIGQYNTSL-EVISNIQHPDIVQLVPPSIEIP 485
+ LD + +LN+ + ++Q Q N + +SN+ H D V ++PP I +P
Sbjct: 322 TMLDSSDFSLKNLNISPDILSSSYVMQQWQKNAPVWNGLSNVVHGDHVPMIPPGINLP 379
>01_06_0892 +
32763195-32764149,32764489-32764575,32764665-32764829,
32764904-32766219
Length = 840
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -3
Query: 163 HYLIKDTICYYKNLXCNTNKLKFLNAARATAPMAXRGMQSLREXPSXEAV 14
H L + C+Y+ L C T+K + + A G QS+ E S V
Sbjct: 59 HVLGNEKPCFYRELICKTHKSEISSLAFCRLHQKLAGAQSMCERCSDSLV 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,209,406
Number of Sequences: 37544
Number of extensions: 448810
Number of successful extensions: 1098
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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