Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I12
         (897 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)                   30   2.9  
SB_30240| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.7  
SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               29   6.7  
SB_20763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_17378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 689 LVSFVLPSNIHKLQKEKRSRSQLR 760
           + +FVLP+N H L   K++RS LR
Sbjct: 485 MAAFVLPANCHNLANAKKTRSDLR 508


>SB_53143| Best HMM Match : PKD (HMM E-Value=2.7e-18)
          Length = 2111

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 483  PGSNEPNKTVVISYDICAYGKSPGHSEVTFNVTPPGFVNLDTVYLRITVMHSNE 644
            PG+ E N T V  Y  CA G+S GH +V  +       +   +   +TV+ S +
Sbjct: 1184 PGTLETNTTYVFRY-YCAKGQSRGHFDVRLHAVETDRPHCAIIVPTLTVLGSRD 1236


>SB_30240| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 357 LLVEETRLLKLVQIGQYNTSLEVISNIQHPDIVQLVPPSIEIPGSNEPNKTV 512
           LL+E  RL  L     Y   L V  ++ HPD  +L+  ++E+   N P  +V
Sbjct: 88  LLLENIRLALLKPT--YLKKLLVNHSLLHPDCTKLIKKALEVQSLNPPEPSV 137


>SB_28263| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 1258

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +3

Query: 249 ISSHRIRFCLVVMLILGIPSAHSQLDKMYVEVTDLNLLVEETRLLKLVQIG 401
           + +HR+R   +  LI  I   H Q D ++ ++   NLL+ +T +LKL   G
Sbjct: 122 VPAHRVRN-YIFQLIKAIKWCH-QNDVIHRDIKPENLLISKTDILKLCDFG 170


>SB_20763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 180 TSGKQITMAECSAVLRPRAAACSISSHRIRFCLVVMLILGIPSAHSQLDKMYVE 341
           T+G  + +  C+ V   R A CS S+ R+  CL    +  I    +  D + ++
Sbjct: 19  TAGAMVVVFVCTRVSEGRLAMCSGSNRRMAACLPKRSVFPIREDENLADNLAID 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,250,711
Number of Sequences: 59808
Number of extensions: 542127
Number of successful extensions: 1427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1425
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)