Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I11
         (899 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    53   1e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    50   6e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.26 
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    37   0.61 
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    36   1.9  

>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 30/57 (52%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
 Frame = +2

Query: 581 CXNESAXARGEAVCVLGXLPLPRSLTRCXRSFGCGERYXL-TQRRYYGYPQNQGIPQ 748
           C  + A AR EAV VL  LPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 22/33 (66%), Positives = 24/33 (72%)
 Frame = +2

Query: 605 RGEAVCVLGXLPLPRSLTRCXRSFGCGERYXLT 703
           R   +C  G +PLPRSLTR  RSFGCGERY LT
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.26
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 579 SALMNRPXRGERRFAYW 629
           +ALMNRP RGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 37.1 bits (82), Expect = 0.61
 Identities = 19/32 (59%), Positives = 20/32 (62%)
 Frame = -2

Query: 781 PFXGLXLTXSVLRYPLILGITVVPPLSEXIPL 686
           P     LT S   YPLIL ITV+PPLSE  PL
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPL 50


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = -3

Query: 630 PNTQTASPRALADSLXQ 580
           PNTQTASPRALADSL Q
Sbjct: 332 PNTQTASPRALADSLMQ 348


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 509,623,174
Number of Sequences: 1657284
Number of extensions: 6001014
Number of successful extensions: 8421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8420
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)