Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I08
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    85   1e-17
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   6.3  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    26   8.4  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 43/93 (46%), Positives = 54/93 (58%)
 Frame = +3

Query: 111 LPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTVRYHT 290
           LP   F K WQ +VKTWFN P R+ R +                  +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNM 67

Query: 291 KVRAGXGFTLREIRAAGLNPVFARTIGIAVDPR 389
           KVRAG GFTL E++AAG++   A TIGI VD R
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHR 100



 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 41/104 (39%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
 Frame = +1

Query: 397 NKSVESLQIXVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 573
           N+S ESLQ  V+RIK Y A LI+FP K  +  KG+A +      T +   ++P+ Q A +
Sbjct: 103 NRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDVAA-VLPITQEAVE 161

Query: 574 SVARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDAAENPD 705
             A+PITE+ K F A+  L   R+ A+  G RA   K  AE  +
Sbjct: 162 E-AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAEEAE 204


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 490 KGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDE 603
           + E N ++ +  TQ +    PV++  PK  + P+T  E
Sbjct: 470 RDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSE 507


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 568 PKSVARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDAAE 696
           P     P  E+E      +YL   +S AK VG   ++L++A +
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,731
Number of Sequences: 5004
Number of extensions: 39674
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)