Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I08
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...   101   6e-22
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...   100   1e-21
06_03_0711 + 23798998-23799106,23799838-23799957,23800181-238003...    29   6.6  
02_01_0754 - 5595813-5595887,5595973-5596071,5596136-5596327,559...    29   6.6  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score =  101 bits (243), Expect = 6e-22
 Identities = 47/94 (50%), Positives = 61/94 (64%)
 Frame = +3

Query: 108 LLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTVRYH 287
           ++P G F K WQ++VKTWFN PAR+ R +                GPLRPIV+C T++Y+
Sbjct: 7   VIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYN 66

Query: 288 TKVRAGXGFTLREIRAAGLNPVFARTIGIAVDPR 389
            K RAG GFTL E++AAG+   FA TIGI+VD R
Sbjct: 67  MKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHR 100



 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 42/100 (42%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
 Frame = +1

Query: 397 NKSVESLQIXVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 573
           N+S+E LQ  VQR+K Y+A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +
Sbjct: 103 NRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTPEELATATQVQGDYMPITRGEKR 162

Query: 574 SV-ARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDA 690
           SV    +T+D K FKAY  LR  R   + +G R KR  +A
Sbjct: 163 SVEVVKVTDDMKAFKAYAKLRVERMNQRHIGARQKRAAEA 202


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score =  100 bits (240), Expect = 1e-21
 Identities = 46/94 (48%), Positives = 61/94 (64%)
 Frame = +3

Query: 108 LLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTVRYH 287
           ++P G F K WQ++VKTWFN PAR+ R +                GPLRPIV+C T++Y+
Sbjct: 7   VIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQCQTLKYN 66

Query: 288 TKVRAGXGFTLREIRAAGLNPVFARTIGIAVDPR 389
            K RAG GFTL E++AAG+   +A TIGI+VD R
Sbjct: 67  MKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHR 100



 Score = 78.6 bits (185), Expect = 6e-15
 Identities = 42/100 (42%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
 Frame = +1

Query: 397 NKSVESLQIXVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 573
           N+S+E LQ  VQR+K Y+A+L++FP + +KV  G++  EE   ATQ++G  MP+ +   +
Sbjct: 103 NRSLEGLQANVQRLKTYKAKLVIFPRRARKVKAGDSTAEELATATQVQGDYMPIARGEKR 162

Query: 574 SV-ARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDA 690
           SV    +T++ K FKAY  LR  R   + VG R KR  +A
Sbjct: 163 SVEVVKVTDEMKAFKAYAKLRVERMNQRHVGARQKRAAEA 202


>06_03_0711 +
           23798998-23799106,23799838-23799957,23800181-23800317,
           23800418-23800579,23800707-23800793,23800872-23800958,
           23801317-23801454,23802023-23802214,23802287-23802385,
           23802490-23802564
          Length = 401

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 384 DLQQFQSFGQILGSILRP 331
           DL+  QS GQI+G +LRP
Sbjct: 54  DLKSLQSVGQIIGEVLRP 71


>02_01_0754 -
           5595813-5595887,5595973-5596071,5596136-5596327,
           5596992-5597129,5597415-5597501,5597583-5597669,
           5597795-5597956,5598089-5598225,5598483-5598602,
           5600668-5600773
          Length = 400

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 384 DLQQFQSFGQILGSILRP 331
           DL+  QS GQI+G +LRP
Sbjct: 53  DLKSLQSVGQIIGEVLRP 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,846,626
Number of Sequences: 37544
Number of extensions: 274470
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)