Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I08
         (897 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)             100   2e-21
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   32   0.55 

>SB_19135| Best HMM Match : Ribosomal_L13e (HMM E-Value=0)
          Length = 600

 Score =  100 bits (239), Expect = 2e-21
 Identities = 48/94 (51%), Positives = 59/94 (62%)
 Frame = +3

Query: 108 LLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTVRYH 287
           ++P G F K WQ +VKTWF+ P R+ R +                G LRPIVRCPT +Y+
Sbjct: 8   IIPNGHFHKDWQRYVKTWFDQPGRKKRRRVARQIKAAKIAPRPVAGSLRPIVRCPTFKYN 67

Query: 288 TKVRAGXGFTLREIRAAGLNPVFARTIGIAVDPR 389
           TKVRAG GFTL E++AAG+    A TIGIAVD R
Sbjct: 68  TKVRAGRGFTLDELKAAGIPRKVAPTIGIAVDHR 101



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
 Frame = +1

Query: 397 NKSVESLQIXVQRIKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 573
           N+S ESLQ  VQR+KEY+++LI+FP K  K  +G++   +   A QL+GP+MP+ Q +  
Sbjct: 104 NRSAESLQANVQRLKEYKSKLIVFPRKANKPKQGDSEAADLANAVQLQGPVMPIPQESVP 163

Query: 574 SVARPITEDEKXFKAYQYLRGARSI-AKLVGI 666
             ARPITEDEK   + +    +  +  KLVG+
Sbjct: 164 IKARPITEDEKKSASSRQCESSGEVKTKLVGL 195


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 32.3 bits (70), Expect = 0.55
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 427 VQRIKEYRARLILFPKGKKVLKGEANEEERKLATQ 531
           + RI+E R   ++F  GK V  G  +EE+ KLA +
Sbjct: 319 IMRIREPRTTALIFSSGKMVCTGAKSEEQSKLAAR 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,062
Number of Sequences: 59808
Number of extensions: 296823
Number of successful extensions: 582
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)