Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I08
         (897 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    93   3e-19
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    72   5e-13

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 45/101 (44%), Positives = 59/101 (58%)
 Frame = +3

Query: 99  GXXLLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTV 278
           G  +L    F K W   +KTWF+ PAR+ R + N              G LR +VRCP  
Sbjct: 5   GNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQK 64

Query: 279 RYHTKVRAGXGFTLREIRAAGLNPVFARTIGIAVDPR*TQQ 401
           RY+TK R G GF+L+E++AAG++   ARTIGIAVD R T +
Sbjct: 65  RYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNK 105



 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
 Frame = +1

Query: 397 NKSVESLQIXVQRIKEYRARLILFPKGKKV-LKGEANEEERKLATQLRGPLMPVQQPAPK 573
           NK+ E L+    R+KEY+A+LILFPK      KG+++ EE K+A QLRG ++P+      
Sbjct: 104 NKTAEGLKANADRLKEYKAKLILFPKKASAPKKGDSSAEELKVAAQLRGDVLPLSHTITF 163

Query: 574 SVARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDAAE 696
              R +T+ E+  + ++ LR  R+  K  G R KR ++AAE
Sbjct: 164 DEPRQVTDAERKVEIFRLLRKERADKKYRGKREKRAREAAE 204


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 34/83 (40%), Positives = 45/83 (54%)
 Frame = +3

Query: 99  GXXLLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTV 278
           G  +L    F K W   +KTWF+ PAR+ R + N              G LR +VRCP  
Sbjct: 5   GNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQK 64

Query: 279 RYHTKVRAGXGFTLREIRAAGLN 347
           RY+TK R G GF+L+E++AA  N
Sbjct: 65  RYNTKTRLGRGFSLQELKAAEEN 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,732,121
Number of Sequences: 27780
Number of extensions: 227297
Number of successful extensions: 452
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)