Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_I08
(897 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br... 95 4e-20
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br... 95 4e-20
At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D) 92 5e-19
At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S ... 85 8e-17
At5g47070.1 68418.m05800 protein kinase, putative similar to pro... 29 3.2
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 5.5
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 5.5
At1g33880.1 68414.m04200 avirulence-responsive family protein / ... 29 5.5
At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger) fa... 28 7.3
>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 95.5 bits (227), Expect = 4e-20
Identities = 45/94 (47%), Positives = 58/94 (61%)
Frame = +3
Query: 108 LLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTVRYH 287
++P G F K WQ++VKTWFN PAR+ R + GPLRP+V T++Y+
Sbjct: 6 VIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYN 65
Query: 288 TKVRAGXGFTLREIRAAGLNPVFARTIGIAVDPR 389
KVR G GFTL E++AAG+ A TIGIAVD R
Sbjct: 66 MKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHR 99
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +1
Query: 397 NKSVESLQIXVQRIKEYRARLILFPK-GKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 573
N+S+E LQ VQR+K Y+ +L++FP+ +KV G++ EE ATQ++G +P+ + P
Sbjct: 102 NRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPT 161
Query: 574 SVARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDA 690
+T + K FKA+ +R R+ + G RAKR +A
Sbjct: 162 MELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEA 200
>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
breast basic conserved protein 1-related (BBC1)
Length = 206
Score = 95.5 bits (227), Expect = 4e-20
Identities = 45/94 (47%), Positives = 58/94 (61%)
Frame = +3
Query: 108 LLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTVRYH 287
++P G F K WQ++VKTWFN PAR+ R + GPLRP+V T++Y+
Sbjct: 6 VIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYN 65
Query: 288 TKVRAGXGFTLREIRAAGLNPVFARTIGIAVDPR 389
KVR G GFTL E++AAG+ A TIGIAVD R
Sbjct: 66 MKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHR 99
Score = 74.1 bits (174), Expect = 1e-13
Identities = 37/99 (37%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +1
Query: 397 NKSVESLQIXVQRIKEYRARLILFPK-GKKVLKGEANEEERKLATQLRGPLMPVQQPAPK 573
N+S+E LQ VQR+K Y+ +L++FP+ +KV G++ EE ATQ++G +P+ + P
Sbjct: 102 NRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPT 161
Query: 574 SVARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDA 690
+T + K FKA+ +R R+ + G RAKR +A
Sbjct: 162 MELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEA 200
>At5g23900.1 68418.m02807 60S ribosomal protein L13 (RPL13D)
Length = 206
Score = 91.9 bits (218), Expect = 5e-19
Identities = 43/94 (45%), Positives = 57/94 (60%)
Frame = +3
Query: 108 LLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTVRYH 287
++P F K WQ++VKTWFN PAR+ R + GPLRP+V T++Y+
Sbjct: 6 VIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYN 65
Query: 288 TKVRAGXGFTLREIRAAGLNPVFARTIGIAVDPR 389
KVRAG GFTL E++ AG+ A TIGI+VD R
Sbjct: 66 MKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHR 99
Score = 75.4 bits (177), Expect = 5e-14
Identities = 40/99 (40%), Positives = 60/99 (60%), Gaps = 1/99 (1%)
Frame = +1
Query: 397 NKSVESLQIXVQRIKEYRARLILFPKGKKVLK-GEANEEERKLATQLRGPLMPVQQPAPK 573
N+S+E LQ VQR+K Y+A+L++FP+ + +K G++ EE ATQ++G MP+
Sbjct: 102 NRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAA 161
Query: 574 SVARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDA 690
+T D K FKAY +R R+ A+ G RAKR +A
Sbjct: 162 MELVKLTADLKAFKAYDKIRLERTNARHAGARAKRAAEA 200
>At3g48960.1 68416.m05348 60S ribosomal protein L13 (RPL13C) 60S
ribosomal protein L13 (BBC1), Arabidopsis thaliana,
gb:X75162
Length = 206
Score = 84.6 bits (200), Expect = 8e-17
Identities = 40/92 (43%), Positives = 55/92 (59%)
Frame = +3
Query: 108 LLPXGXFXKXWQSFVKTWFNXPARRYRXKXNXIXXXXXXXXXXXXGPLRPIVRCPTVRYH 287
++P G F K W+++VKT FN PA + R + GP+RP+V T+ Y+
Sbjct: 6 VIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYN 65
Query: 288 TKVRAGXGFTLREIRAAGLNPVFARTIGIAVD 383
KVRAG GFTL E++AAG+ A TIGI+VD
Sbjct: 66 MKVRAGKGFTLEELKAAGIPKKLAPTIGISVD 97
Score = 67.3 bits (157), Expect = 1e-11
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Frame = +1
Query: 397 NKSVESLQIXVQRIKEYRARLILFPKGKKVLK-GEANEEERKLATQLRGPLMPVQQPAPK 573
N+S+E Q VQR+K Y+A+L++FP+ + +K G++ ++E ATQ++ MP+ + P
Sbjct: 102 NRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPT 161
Query: 574 SVARPITEDEKXFKAYQYLRGARSIAKLVGIRAKRLKDA 690
+T D K F AY +R + G+RAKR +A
Sbjct: 162 MELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEA 200
>At5g47070.1 68418.m05800 protein kinase, putative similar to
protein kinase [Lophopyrum elongatum]
gi|13022177|gb|AAK11674
Length = 410
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 472 KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITEDEKXFKAYQY 627
KGK++L+ A E + T P P+P+S+ TE E+ + + Y
Sbjct: 25 KGKELLQNSAPELTNRSETSSFNLQTPRSLPSPRSIKDLYTEREQNLRVFSY 76
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 384 DLQQFQSFGQILGSILRP 331
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 384 DLQQFQSFGQILGSILRP 331
DL+ QS GQI+G +LRP
Sbjct: 52 DLKSLQSVGQIIGEVLRP 69
>At1g33880.1 68414.m04200 avirulence-responsive family protein /
avirulence induced gene (AIG1) family protein similar to
AIG1 protein SP:P54120 [Arabidopsis thaliana]; contains
Pfam PF04548: AIG1 family;
Length = 234
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 442 EYRARLILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPITED 600
E+ R++ F G+KVL +E A Q+ + V + K+ +P TED
Sbjct: 165 EFLMRVLRFCNGRKVLFNNMTNDEGVKAEQVNQVMAHVAAISKKNDEKPYTED 217
>At2g31780.1 68415.m03880 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam:PF01485 IBR
domain
Length = 537
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 368 WNCCRSPXDATSLLNHCKSMFKE*RNTERVLYCSRKAKRC*RV-RPMKKNVSWLH 529
WNCC K + K +E + + K K C + RP++KN H
Sbjct: 259 WNCCEDAHSPVDCETVSKWLLKNKDESENMNWILAKTKPCPKCKRPIEKNTGCNH 313
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,863
Number of Sequences: 28952
Number of extensions: 211891
Number of successful extensions: 460
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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