Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I07
         (886 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.19 
At1g59453.1 68414.m06679 transcription factor-related weak simil...    29   4.1  
At1g59077.1 68414.m06670 hypothetical protein                          29   4.1  
At1g58766.1 68414.m06659 hypothetical protein                          29   4.1  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    29   5.4  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 75  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 254
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 255 SEVITNV 275
             +  N+
Sbjct: 214 GSIAPNL 220


>At1g59453.1 68414.m06679 transcription factor-related weak similarity
            to TFIIIC Box B-binding subunit [Homo sapiens] GI:442362
          Length = 1729

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
 Frame = +3

Query: 168  LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNVVNKL----IRNNKMNCMEYAYQL 332
            LEE   N VV +DY ++ +K  H+ E    +V I N+        ++          +  
Sbjct: 1545 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNIPEMAETSGLQEESTKAPSVTFGT 1604

Query: 333  WLQGLQGTSSGIVSQXEFRLIFAENAI-KLMYKRDGL 440
             ++G    S+ + SQ  F  I A+ ++ K+++  DGL
Sbjct: 1605 SIEGETKESTSVKSQPIFPWINADGSVNKVVF--DGL 1639


>At1g59077.1 68414.m06670 hypothetical protein
          Length = 665

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
 Frame = +3

Query: 168 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNVVNKL----IRNNKMNCMEYAYQL 332
           LEE   N VV +DY ++ +K  H+ E    +V I N+        ++          +  
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNIPEMAETSGLQEESTKAPSVTFGT 540

Query: 333 WLQGLQGTSSGIVSQXEFRLIFAENAI-KLMYKRDGL 440
            ++G    S+ + SQ  F  I A+ ++ K+++  DGL
Sbjct: 541 SIEGETKESTSVKSQPIFPWINADGSVNKVVF--DGL 575


>At1g58766.1 68414.m06659 hypothetical protein
          Length = 665

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
 Frame = +3

Query: 168 LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEV-ITNVVNKL----IRNNKMNCMEYAYQL 332
           LEE   N VV +DY ++ +K  H+ E    +V I N+        ++          +  
Sbjct: 481 LEEHRSNDVVTSDYSTSKDKQVHVSENSVHKVTILNIPEMAETSGLQEESTKAPSVTFGT 540

Query: 333 WLQGLQGTSSGIVSQXEFRLIFAENAI-KLMYKRDGL 440
            ++G    S+ + SQ  F  I A+ ++ K+++  DGL
Sbjct: 541 SIEGETKESTSVKSQPIFPWINADGSVNKVVF--DGL 575


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +1

Query: 58   LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 216
            LG    +T+Q    + +    +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1065 LGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,298
Number of Sequences: 28952
Number of extensions: 279613
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)