Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I04
         (893 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   28   8.9  

>SB_13455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 611 VNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQELT 483
           VN +Q F    + ++   +SR+   + +R  DN D EG+ E T
Sbjct: 658 VNDIQDFAFSNNMKLNPAKSRHQAFIPLRCKDNGDREGMFEAT 700


>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 144 IKPKNVDAVFVEKQKQILSFFQXVSQLNTDD-EYYKIGK---XYDIEM 275
           I  + ++A  +EK K++L FF  +   N +D EY  I      Y +EM
Sbjct: 227 ILKEEIEAFSIEKMKEVLLFFDPIDVSNMEDFEYSHINAEDIMYSLEM 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,687,955
Number of Sequences: 59808
Number of extensions: 452029
Number of successful extensions: 1013
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)