Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP02_F_I04
(893 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein... 30 1.9
U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein... 30 1.9
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 30 1.9
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 30 1.9
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 30 1.9
Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical pr... 30 2.6
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 30 2.6
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 30 2.6
DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein. 30 2.6
AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transpor... 30 2.6
>U41994-2|AAO38634.1| 154|Caenorhabditis elegans Rnase h protein
1.0, isoform b protein.
Length = 154
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 225 NTDDEYYKIGKXYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIAL 404
+T D YY + + + + + +TN V+E +K Y P + ++S +EAIA
Sbjct: 62 STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAY 109
Query: 405 FHLFYYAKD 431
FH +Y K+
Sbjct: 110 FHKYYEGKE 118
>U41994-1|AAO91711.1| 155|Caenorhabditis elegans Rnase h protein
1.0, isoform a protein.
Length = 155
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +3
Query: 225 NTDDEYYKIGKXYDIEMNMDNYTNKKAVEEFLKMYRTGFMPKNLEFSVFYDKMRDEAIAL 404
+T D YY + + + + + +TN V+E +K Y P + ++S +EAIA
Sbjct: 62 STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKKWSTL-----EEAIAY 109
Query: 405 FHLFYYAKD 431
FH +Y K+
Sbjct: 110 FHKYYEGKE 118
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 633 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 737
+++P IHKE F YK+N A+LY E
Sbjct: 227 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 261
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 633 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 737
+++P IHKE F YK+N A+LY E
Sbjct: 211 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 245
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 30.3 bits (65), Expect = 1.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 633 LINPEAAAKYGIHKENDYFVYKANYSNAVLYNNEE 737
+++P IHKE F YK+N A+LY E
Sbjct: 208 VLSPTRELAIQIHKEATKFSYKSNIQTAILYGGRE 242
>Z74041-8|CAA98519.2| 610|Caenorhabditis elegans Hypothetical
protein T03F7.1 protein.
Length = 610
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 638 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 348 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 482
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 348 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 482
KN+ D+M DEAI LF FE +YK R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536
>DQ482732-1|ABF20555.1| 610|Caenorhabditis elegans SNF-11 protein.
Length = 610
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 638 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
>AY529124-1|AAT02634.1| 610|Caenorhabditis elegans GABA transporter
protein protein.
Length = 610
Score = 29.9 bits (64), Expect = 2.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 638 NEAILHLCYVNFLQHFHIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
N I V L H HIH++ + +F+ + N TV A D S V ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,848
Number of Sequences: 27780
Number of extensions: 354518
Number of successful extensions: 980
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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