Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I04
         (893 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    33   0.26 
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    33   0.26 
At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containi...    31   1.0  
At2g36305.1 68415.m04456 CAAX amino terminal protease family pro...    30   2.4  

>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2193

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 581 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 423
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
           putative similar to SP|P22082 Transcription regulatory
           protein SNF2 (SWI/SNF complex component SNF2)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 2192

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = -1

Query: 581 KHFRVYFIRSRNNETVAIRALDNSDVEGIQELTLIEMHTRKTGSLVERFKVLS 423
           K  R +  R  +     + AL N+DVE  +E+ L+E  T   G   ER+ VLS
Sbjct: 828 KMLREFSKRKDDGRNKRMEALKNNDVERYREM-LLEQQTNMPGDAAERYAVLS 879


>At5g46580.1 68418.m05735 pentatricopeptide (PPR) repeat-containing
           protein contains similarity to 67kD chloroplastic
           RNA-binding protein, P67.1 [Raphanus sativus]
           GI:9755886; contains Pfam profile PF01535: PPR repeat
          Length = 711

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 300 KAVEEFLKMYRTGFMPKNLEFSVFYD 377
           KA+E F +MY+TG MP  + +S   D
Sbjct: 239 KAIEWFERMYKTGLMPDEVTYSAILD 264


>At2g36305.1 68415.m04456 CAAX amino terminal protease family
           protein similar to CAAX prenyl protease 2 (EC 3.4.22.-)
           (Prenyl protein-specific endoprotease 2)
           (Farnesylated-proteins converting enzyme 2) (FACE-2)
           from Mus musculus [SP|P57791], Homo sapiens [SP|Q9Y256],
           Drosophila melanogaster [SP|Q9U1H8]; contains Pfam
           profile PF02517 CAAX amino terminal protease family
           protein
          Length = 242

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = -1

Query: 695 VNEVVVF---LVNAILSCGFRINEAILHLCYVNF-LQHFHIHKHFRVYFIR 555
           V E +VF   ++  +L  GFRIN AI  LC V F L H +   HFR  +IR
Sbjct: 93  VTEELVFRSCMIPLLLCAGFRINTAIF-LCPVLFSLAHLN---HFREMYIR 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,483,408
Number of Sequences: 28952
Number of extensions: 316197
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)