Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I03
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    56   5e-09
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.64 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.5  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    28   1.5  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 23/31 (74%), Positives = 28/31 (90%)
 Frame = +1

Query: 94  MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 186
           M+N+AG+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHAS 31



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +2

Query: 191 QLVIADVDPATGRAADTSKM-YVVCGAIRRMGESDDCIVRLTKKDGIL 331
           Q+ +  VD A GR     K  Y + G +R  GESDDCI RLT +DG+L
Sbjct: 33  QINVCAVD-AEGRQIPGEKTTYAISGFVRSKGESDDCINRLTTQDGLL 79


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 16/55 (29%), Positives = 18/55 (32%)
 Frame = +3

Query: 669 LMNPPXPGXXGLXXGPLPLLXPDXXPPPXXCXXRXXPPXXGXXXXXPXXXPXXPP 833
           L +PP P    +   P P   P   P P        PP  G     P   P  PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 135 RAVQVNEFTGVVLHFICTSTRVH 67
           RAV + + TG VLHF  T T VH
Sbjct: 808 RAVPLRDCTGSVLHFFGTMTDVH 830


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 176 SLAWMRRLLAEHFLGQYKSTNSPASFCILYVRPHGYTGIDR 54
           SL  M  +L EH+ G++    SP   CI+ V    Y   D+
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPVSAAAYNYADK 615


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,327,302
Number of Sequences: 5004
Number of extensions: 36828
Number of successful extensions: 82
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)