Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I03
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     55   8e-08
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    53   3e-07
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    31   1.6  
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866     29   6.3  
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388...    28   8.3  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = +1

Query: 94  MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 186
           MQN+ G+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHAS 31


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +1

Query: 94  MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 186
           MQN+ G+ VDLY PRKCS +NR+I AKDHAS
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHAS 31


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 86  HIKCRTTPVNSLTCTARGNARPATASST 169
           H++CR+TP +SLT     N  PA++SS+
Sbjct: 81  HLRCRSTPRDSLTYNTLLNHLPASSSSS 108


>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
          Length = 785

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 28  ILKIFCFSHLSIP-VYPCGRTYKMQNDAGEFVDLY-CPRKCSASNRLI 165
           + K F     S P + P G+  + Q D G  ++L  CP +CS + +L+
Sbjct: 239 LTKTFMHRSSSTPCLSPTGKDIQQQRDRGGPIELLVCPSRCSRTKQLV 286


>09_04_0515 +
           18238434-18238545,18238659-18238709,18238844-18238897,
           18239727-18239777,18239845-18239895,18240056-18240210,
           18240550-18240663,18240873-18240938,18241478-18241561,
           18241640-18241726,18241975-18242066,18242163-18242223,
           18242475-18242531,18243129-18243220,18243394-18243584,
           18244203-18244321,18244518-18244589,18244699-18244784,
           18244866-18244962,18245488-18245622
          Length = 608

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 167 WMRRLLAEHFLGQYKSTNSPASFCILYVRPHGYTGIDRCEKQKILRIPYSEA 12
           W+R L  E  L   K  NS   F I     +GYT  D  ++ + L++ Y ++
Sbjct: 281 WIRFLGKEEALKLMKWNNSDPHFSIRVNTANGYTRADLIDRLESLQVHYEKS 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,687,568
Number of Sequences: 37544
Number of extensions: 290871
Number of successful extensions: 970
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)