Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I03
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29271| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   1.6  
SB_47531| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         30   2.1  
SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58)                 29   3.7  
SB_50028| Best HMM Match : DUF1484 (HMM E-Value=1.6)                   29   4.9  
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_39538| Best HMM Match : VWA (HMM E-Value=0)                         29   6.4  
SB_28104| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)                 29   6.4  
SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_29271| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 796

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +2

Query: 5   LNTPHYREFLRFFAFRICQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATASS-TLR 175
           L++     F+RF AF   +  C RV+V+      P    T T +G    A +SS T+R
Sbjct: 90  LSSAESARFVRFSAFTWSRMICMRVEVYAHDNIAPFKINTATIKGTLIAAPSSSATIR 147


>SB_47531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 32  LRFFAFRICQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATA 160
           L     RI + PCTR+DV+I  R   +    C    +  P  A
Sbjct: 36  LNMIKVRIWKSPCTRLDVNIYARNDAIRQFCCIGYSSNLPEAA 78


>SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +2

Query: 116 SLTCTARGNARPATASSTLRTM--LQXQLVIADVDPATGRAADTSK 247
           SL+  ARG A   TA S + T+   + +++ A++DP TG+ A  SK
Sbjct: 241 SLSSVARGVAGHHTAESIVETINRAESKILTAELDPLTGKIALMSK 286


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/52 (32%), Positives = 18/52 (34%)
 Frame = +3

Query: 678 PPXPGXXGLXXGPLPLLXPDXXPPPXXCXXRXXPPXXGXXXXXPXXXPXXPP 833
           PP P    L  G LP+  P   PPP  C     PP            P  PP
Sbjct: 696 PPPPPPPPLLSGTLPMPPPP-PPPPPGCAGLPPPPPSPQPGCAGLPPPPPPP 746


>SB_29421| Best HMM Match : N_methyl (HMM E-Value=0.58)
          Length = 534

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +2

Query: 35  RFFAFRICQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATASSTLRTM--LQXQLVIAD 208
           RF A R C    +  ++  + + T +++L   A   A   TA S + T+   + +++ A 
Sbjct: 318 RFVALRHCSLFNSWYNLEREHQITTISALPPIATLPAGHHTAESIVETINRAESRILTAK 377

Query: 209 VDPATGRAADTSKMYVVCGAI 271
           +DP TG+ A  S++  + G +
Sbjct: 378 LDPPTGKIALVSRVAGLIGVV 398


>SB_50028| Best HMM Match : DUF1484 (HMM E-Value=1.6)
          Length = 134

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
 Frame = +2

Query: 38  FFAFRICQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATASSTLRTM--LQXQLVIADV 211
           F A R C    +  ++  + R T + SL   A   A   TA S + T+   + +++ A +
Sbjct: 26  FVALRQCSLFNSGYNLEREHRITTIASLPPIATLPAGHHTAESIVETINRAESKILSAKL 85

Query: 212 DPATGRAADTSK 247
           DP TGR A  SK
Sbjct: 86  DPLTGRIALMSK 97


>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1492

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 35  RFFAFRICQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATASSTLRTM--LQXQLVIAD 208
           RF A R C    +  ++  + + T + SL   A   A   TA S + T+   + +++ A 
Sbjct: 25  RFVALRQCSLFNSWYNLEREHQITTIASLPPIATLPAGHHTAESIVETINRAESKILTAK 84

Query: 209 VDPATGRAADTSK 247
           +DP TG+ A  SK
Sbjct: 85  LDPLTGKIALVSK 97


>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3208

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 5    LNTPHYREFLRFFAFRICQFPCTRVDVHI 91
            +N  H+R  L        QFP +R DVH+
Sbjct: 2559 INETHFRSLLEIVKIAYHQFPVSRSDVHV 2587


>SB_28104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 35  RFFAFRICQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATASSTLRTM--LQXQLVIAD 208
           RF A R C    +  ++  + + T + SL   A   A   TA S + T+   + +++ A 
Sbjct: 25  RFVALRQCSLFNSWYNLEREHQITTIASLPPIATLPAGHHTAESIVETINRAESKILTAK 84

Query: 209 VDPATGRAADTSK 247
           +DP TG+ A  SK
Sbjct: 85  LDPLTGKIALVSK 97


>SB_29438| Best HMM Match : TPR_2 (HMM E-Value=3.8e-36)
          Length = 1021

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 35  RFFAFRICQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATASSTLRTM--LQXQLVIAD 208
           RF A R C    +  ++  + + T + SL   A   A   TA S + T+   + +++ A 
Sbjct: 25  RFVALRQCSLFNSWYNLEREHQITTIASLPPIATLPAGHHTAESIVETINRAESKILTAK 84

Query: 209 VDPATGRAADTSK 247
           +DP TG+ A  SK
Sbjct: 85  LDPLTGKIALVSK 97


>SB_57139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 854

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 14  PHYREFLRFFAFRICQFPCTRVDVHIK 94
           P   +F+RF+  +   +PC RVDV+ K
Sbjct: 143 PRLAKFVRFYPHKYEGYPCMRVDVYGK 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,401,803
Number of Sequences: 59808
Number of extensions: 307790
Number of successful extensions: 881
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)