Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I03
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B) ribo...    52   4e-07
At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C) ribo...    51   1e-06
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    29   3.0  
At1g26150.1 68414.m03192 protein kinase family protein similar t...    29   4.0  
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain...    28   9.2  

>At3g53890.1 68416.m05953 40S ribosomal protein S21 (RPS21B)
           ribosomal protein S21, cytosolic - Oryza sativa,
           PIR:S38357
          Length = 82

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 21/31 (67%), Positives = 27/31 (87%)
 Frame = +1

Query: 94  MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 186
           M+NDAG+  +LY PRKCSA+NR+I +KDHAS
Sbjct: 1   MENDAGQVTELYIPRKCSATNRMITSKDHAS 31


>At5g27700.1 68418.m03322 40S ribosomal protein S21 (RPS21C)
           ribosomal protein S21, Zea mays, PIR:T03945
          Length = 85

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 21/31 (67%), Positives = 26/31 (83%)
 Frame = +1

Query: 94  MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 186
           MQN+ G+  +LY PRKCSA+NRLI +KDHAS
Sbjct: 1   MQNEEGQVTELYIPRKCSATNRLITSKDHAS 31


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +2

Query: 716 PSASXS*PXXXPXPXXXXXXPPPXRXXXXPPXXXSPXXPSXP 841
           P  S   P   P P      PPP      PP   SP  PS P
Sbjct: 447 PVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPP 488



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 737 PXXXPXPXXXXXXPPPXRXXXXPPXXXSPXXPSXPXXXXXP 859
           P   P P      PPP      PP   SP  P  P     P
Sbjct: 438 PPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPP 478



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/42 (33%), Positives = 14/42 (33%)
 Frame = +2

Query: 716 PSASXS*PXXXPXPXXXXXXPPPXRXXXXPPXXXSPXXPSXP 841
           P  S   P   P P      PPP      PP   SP  P  P
Sbjct: 462 PVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPP 503


>At1g26150.1 68414.m03192 protein kinase family protein similar to
           Pto kinase interactor 1 GI:3668069 from [Lycopersicon
           esculentum]
          Length = 760

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/53 (26%), Positives = 17/53 (32%)
 Frame = +3

Query: 675 NPPXPGXXGLXXGPLPLLXPDXXPPPXXCXXRXXPPXXGXXXXXPXXXPXXPP 833
           +PP P   G     +P+  P    PP        PP        P   P  PP
Sbjct: 76  SPPSPSLTGPPPTTIPVSPPPEPSPPPPLPTEAPPPANPVSSPPPESSPPPPP 128


>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to  NtN2 [Medicago truncatula] GI:3776084; contains Pfam
           profile PF00917: MATH domain
          Length = 420

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
 Frame = -3

Query: 835 RGGXXGXXXGXXXXXPXXGGXXRXXXXXG-GGXXSGXRSGRGPIXKPXXPG 686
           RGG  G   G     P   G        G GG   G R  RGP   P  PG
Sbjct: 20  RGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFGGRGPRGPGFGPRGPG 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,580,651
Number of Sequences: 28952
Number of extensions: 218855
Number of successful extensions: 850
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)