Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I02
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   3.8  
SB_43506| Best HMM Match : DUF6 (HMM E-Value=0.14)                     29   3.8  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                29   5.0  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    29   5.0  
SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  
SB_18598| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 180 GFEENLMRNWVCLVEHESSRDTSKTN 257
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


>SB_43506| Best HMM Match : DUF6 (HMM E-Value=0.14)
          Length = 123

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 23/88 (26%), Positives = 40/88 (45%)
 Frame = -3

Query: 563 RTKHTVLFRGDRIESLP*SSQWNLAAANIR*GALAVVLPTVPGIEAVTFVNFLSAFRCLS 384
           + KH ++  G     LP S+ + +AA  +  G  A++  T P +  +  + F +    LS
Sbjct: 31  KLKHCLML-GVINAGLP-SAMYCMAALVLPAGYSAILNATTPMMGVLIGMLFFAEAMTLS 88

Query: 383 NVVSQEVGALNVAVFARTGAFAAPVPVV 300
                 +G   VAV  RTG     +P++
Sbjct: 89  KAAGVAIGLFGVAVLTRTGPVEFDLPLL 116


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -1

Query: 247 DVSRLLSCSTRHTQFLMRFSSK-PCFL--SSCTRPXLVNVLASEPTQRTTKAKIINXCIS 77
           D  +   C++   Q L+    K PC     SC +  + +V A E  Q TT AK ++ C S
Sbjct: 98  DQRKAKCCNSGEHQSLISEDEKLPCLSVKKSCFKEGIASVPAKETDQVTTTAKDVSDCCS 157

Query: 76  S 74
           +
Sbjct: 158 N 158


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 173 ETWLRRKSHEELGMSGRAREQP*HVQDEHEP 265
           E WL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_9094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 510

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +3

Query: 177 HGFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKDCNVK 356
           H  +   +++W+  +  E  RDT+      N      + ++N+  W  K     K  +VK
Sbjct: 53  HEADPVAVKSWLKKLSEEQFRDTADKYLRPNNCSHVVVPKVNEEIW-GKLTRQVKTKDVK 111

Query: 357 CSDLLTDDITKAAKCAKK 410
            S L T +ITKA   A K
Sbjct: 112 FSRLQT-NITKAGHIAVK 128


>SB_18598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 439

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 421 VTASMP--GTVGRTTARAPYLILAAAKFHCELQGRLSIRSPRNRTV 552
           VT  +P  GTVGR+    P+ ++  A   C     L + +P N  V
Sbjct: 330 VTIFLPILGTVGRSIGTHPWYLMIPATISCSFAFMLPVATPPNAIV 375


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,907,015
Number of Sequences: 59808
Number of extensions: 328886
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)