Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I01
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    30   0.50 
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    29   1.2  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    28   2.0  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   3.5  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    27   3.5  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   6.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   8.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   8.1  
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    26   8.1  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = -2

Query: 402 SAGIDQLKGFDN--SPKMPVADSSRPPK**QNLFSLFFE----PLQNFLNSASIFLGSFF 241
           SA ID L G DN  SP  P  ++S P     + F  F      P  + LN+AS+F+GS  
Sbjct: 274 SAMIDLL-GLDNEPSPAQPQTNTSAPLAFEDDGFGDFQSSAAAPASSTLNNASLFMGS-- 330

Query: 240 TSSDSVAANFSTVFTHTSQSPSRSDRTTCTA 148
            ++ + A N    F     +PS    +   A
Sbjct: 331 QTASTAAKNDDDAFDDFQSAPSAKPASNTAA 361


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +2

Query: 260 IEAEFKKFCKGSKNKENRFCYYLGGLEESATGILGELS---KPLSWSMPADKICEKLKKK 430
           IE +  +    S + +NR+ YY   L E  + ILG +    +P    MP   + E  +K 
Sbjct: 84  IEDKLLRISSNSPSAKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKS 143

Query: 431 DAQICD 448
                D
Sbjct: 144 KRDSTD 149


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +2

Query: 227 LSDDVKKDPKKIEAEFKK 280
           L DD  KDP KIEAE +K
Sbjct: 342 LGDDAIKDPTKIEAEVRK 359


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 224 TLSDDVKKDPKKIEAEFKKFCKGSKNKENRFCYYLGG 334
           T + ++KK+P K+E   ++ C+          YY GG
Sbjct: 285 TSTGELKKEPTKLERASEEICRAISFDVKNDVYYSGG 321


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 389 SMPADKICEKLKKKDAQICDLRFDKQIDLN 478
           S+P  K+ +K  + + QICD  +D QIDL+
Sbjct: 175 SLPDKKLIDKYYQLNEQICD--YDVQIDLD 202


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 368  LSKPLSWSMPADKICEKLKKKDAQICDL 451
            LS PL WS+  ++  E LKKKD  + +L
Sbjct: 1153 LSMPL-WSLTYERYVELLKKKDEVMAEL 1179


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 527 NDWDEVCDGC 556
           +DWD+ CDGC
Sbjct: 340 DDWDDSCDGC 349


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 300 FFEPLQNFLNSASIF----LGSFFTSSDSVAANFSTVFTHTSQSPSRS 169
           +F  + +FL   ++F    L SFFT S  +     + F H + SP+RS
Sbjct: 170 WFVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNSSPNRS 217


>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 197 VKTVEKFAATLSDDVKKDPKKIEAEFKKFCKGSK 298
           +KT ++   T  + +    K++EAEF+KF K +K
Sbjct: 75  LKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNK 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,992
Number of Sequences: 5004
Number of extensions: 53506
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)