Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP02_F_I01
         (880 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57584| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           29   3.7  

>SB_57584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 31/94 (32%), Positives = 41/94 (43%)
 Frame = -3

Query: 440 FVHLFSSIFHIFYRRA*TNLRALTILPKCRWLTLRDLLNSNKIYFLCSLNLYRTF*ILPR 261
           F HL   +++I Y  A TNL +   L KC    L  L N + + F+ S N+   F    R
Sbjct: 29  FPHLMQ-LYNIRYVMAKTNLISKDFLDKCDLRRLSQLHNGSSV-FVRSPNVGYGFLEFVR 86

Query: 260 FF*GLSSHHLIAWRQTSLQFSHTLRNHLLEVIGP 159
              G  S  L   RQT L  +   +N  L  I P
Sbjct: 87  VS-GYVSGDLKGMRQTVLSITQIYQNKQLLTINP 119


>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 332 GLEESATGILGELSKPLSWSMPADKICEKLKKKDAQICDLRFDKQIDLN 478
           G ++  +   GE SK +S +    K C ++K KDA +  + FD+ +  N
Sbjct: 39  GAKDKWSQYTGEQSKAISEAFKEGKTCVEIKNKDATLV-VMFDRMVQRN 86


>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = +1

Query: 649 KALKPIIKFMNCLLKKCVDIYXQVLI 726
           ++L+ + +F++CL K  VDIY +V++
Sbjct: 648 QSLEALYQFLDCLCKNSVDIYCEVIL 673


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -2

Query: 396 GIDQLKGFDNSPKMPVADSSRPPK**-QNLFSLFFEPLQNFLNSASIFLGSFFTSSDSVA 220
           G++ L+ FD  P         PPK    N FS+  +PL    N + I   S F S+D+++
Sbjct: 560 GLNILQEFDEEPVFENEFEQMPPKSKVANRFSITTQPLDIVWNPSVIDRVSDFFSNDTLS 619

Query: 219 ANFSTV 202
           A +  V
Sbjct: 620 AQYVNV 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,639,345
Number of Sequences: 59808
Number of extensions: 364970
Number of successful extensions: 848
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)